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Brassica rapa (Brapa_1.0) ▼

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The Brassica rapa genome browser has been developed through a joint effort by the Ensembl Genomes group and Rothamsted Research. From release 13 of Ensembl Genomes, the EBI will be maintaining the genome browser for B. rapa in the context of Ensembl Plants.

Rothamsted Research Acknowledges:

  • BBSRC for funding (grant number BB/E017797/1)
  • Ian Bancroft and Martin Trick at the John Innes Centre for providing the gene annotation.
  • Nick James and Sean May (NASC) for their assistance in establishing BrassEnsembl.

About Brassica rapa

Brassica rapa is a widely cultivated leaf and root vegetable, with different strains producing turnips (roots), bok choi, choi sum, chinese cabbage, field mustard and napa cabbage.

Taxonomy ID 3711

Data source Brassica rapa Genome Sequencing Project

More information and statistics

View karyotypeExample region

Genome assembly: Brapa_1.0

More information and statistics

Download DNA sequence (FASTA)

Display your data in Ensembl Plants

Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Regulation

What can I find? Microarray annotations.

More about the Ensembl Plants microarray annotation strategy