[["rect",[150,5,185,10],{"title":"Exon: Bo3g076130.1_exon_1; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 1 ; Last aa: 32 ; Start phase: 0; End phase: 2; Length: 96bp, 32 aa"}],["rect",[183,5,246,10],{"title":"Exon: Bo3g076130.1_exon_2; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 33 ; Last aa: 90 (1st base); Start phase: 0; End phase: 0; Length: 172bp, 57 1/3 aa"}],["rect",[244,5,286,10],{"title":"Exon: Bo3g076130.1_exon_3; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 90 (2nd base); Last aa: 127 ; Start phase: 1; End phase: 2; Length: 113bp, 37 2/3 aa"}],["rect",[284,5,405,10],{"title":"Exon: Bo3g076130.1_exon_4; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 128 ; Last aa: 240 (1st base); Start phase: 0; End phase: 0; Length: 337bp, 112 1/3 aa"}],["rect",[403,5,439,10],{"title":"Exon: Bo3g076130.1_exon_5; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 240 (2nd base); Last aa: 271 ; Start phase: 1; End phase: 2; Length: 95bp, 31 2/3 aa"}],["rect",[437,5,486,10],{"title":"Exon: Bo3g076130.1_exon_6; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 272 ; Last aa: 316 (2nd base); Start phase: 0; End phase: 1; Length: 134bp, 44 2/3 aa"}],["rect",[483,5,506,10],{"title":"Exon: Bo3g076130.1_exon_7; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 316 (3rd base); Last aa: 335 (2nd base); Start phase: 2; End phase: 1; Length: 57bp, 19 aa"}],["rect",[504,5,533,10],{"title":"Exon: Bo3g076130.1_exon_8; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 335 (3rd base); Last aa: 361 (2nd base); Start phase: 2; End phase: 1; Length: 78bp, 26 aa"}],["rect",[531,5,553,10],{"title":"Exon: Bo3g076130.1_exon_9; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 361 (3rd base); Last aa: 379 ; Start phase: 2; End phase: 2; Length: 55bp, 18 1/3 aa"}],["rect",[551,5,562,10],{"title":"Exon: Bo3g076130.1_exon_10; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 380 ; Last aa: 387 ; Start phase: 0; End phase: 2; Length: 24bp, 8 aa"}],["rect",[560,5,590,10],{"title":"Exon: Bo3g076130.1_exon_11; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 388 ; Last aa: 414 ; Start phase: 0; End phase: 2; Length: 81bp, 27 aa"}],["rect",[588,5,660,10],{"title":"Exon: Bo3g076130.1_exon_12; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 415 ; Last aa: 481 (1st base); Start phase: 0; End phase: 0; Length: 199bp, 66 1/3 aa"}],["rect",[658,5,681,10],{"title":"Exon: Bo3g076130.1_exon_13; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 481 (2nd base); Last aa: 500 (2nd base); Start phase: 1; End phase: 1; Length: 58bp, 19 1/3 aa"}],["rect",[679,5,724,10],{"title":"Exon: Bo3g076130.1_exon_14; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 500 (3rd base); Last aa: 541 (2nd base); Start phase: 2; End phase: 1; Length: 123bp, 41 aa"}],["rect",[722,5,756,10],{"title":"Exon: Bo3g076130.1_exon_15; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 541 (3rd base); Last aa: 571 (1st base); Start phase: 2; End phase: 0; Length: 89bp, 29 2/3 aa"}],["rect",[754,5,788,10],{"title":"Exon: Bo3g076130.1_exon_16; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 571 (2nd base); Last aa: 601 (1st base); Start phase: 1; End phase: 0; Length: 90bp, 30 aa"}],["rect",[786,5,848,10],{"title":"Exon: Bo3g076130.1_exon_17; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 601 (2nd base); Last aa: 658 (1st base); Start phase: 1; End phase: 0; Length: 171bp, 57 aa"}],["rect",[846,5,888,10],{"title":"Exon: Bo3g076130.1_exon_18; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 658 (2nd base); Last aa: 695 ; Start phase: 1; End phase: 2; Length: 113bp, 37 2/3 aa"}],["rect",[886,5,934,10],{"title":"Exon: Bo3g076130.1_exon_19; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 696 ; Last aa: 739 (1st base); Start phase: 0; End phase: 0; Length: 130bp, 43 1/3 aa"}],["rect",[932,5,998,10],{"title":"Exon: Bo3g076130.1_exon_20; Location: <a href=\"/Brassica_oleracea/Location/View?db=core;g=Bo3g076130;r=C3:28859825-28865028;t=Bo3g076130.1\">C3:28859825-28865028</a>; First aa: 739 (2nd base); Last aa: 798 ; Start phase: 1; End phase: 2; Length: 179bp, 59 2/3 aa"}],["rect",[15,5,88,19],{"alt":"Brassica oleracea (Brassica oleracea var. oleracea)","klass":["label","MxcU4Krt"]}],["rect",[755,20,768,25],{"title":"Low complexity (Seg); Position: 571-582"}],["rect",[904,20,918,25],{"title":"Low complexity (Seg); Position: 712-724"}],["rect",[15,20,136,34],{"alt":"Brassica oleracea (Brassica oleracea var. oleracea)","klass":["label","Tab7LNg2"]}],["rect",[151,36,996,41],{"title":"AFDB-ENSP mappings; Position: 1-797"}],["rect",[151,36,996,41],{"title":"AFDB-ENSP mappings; Position: 1-797"}],["rect",[15,36,124,50],{"klass":["label","7Qun7wuF"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[316,52,433,66],{"title":"Superfamily SSF57850; Positions: 157-266","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418506;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_superfamily;translation_id=38994"}],["rect",[471,52,994,66],{"title":"Superfamily SSF54001; Positions: 303-796; Interpro: IPR038765; Papain-like cysteine peptidase superfamily","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418508;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_superfamily;translation_id=38994"}],["rect",[832,71,953,85],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418503;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_superfamily;translation_id=38994","title":"Superfamily SSF46934; Positions: 644-711; Interpro: IPR009060; UBA-like superfamily"}],["rect",[15,52,82,66],{"alt":"Brassica oleracea (Brassica oleracea var. oleracea)","klass":["label","pS2QYGuD"]}],["rect",[800,94,963,108],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19935932;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_smart;translation_id=38994","title":"SMART SM00165; Positions: 614-708; Interpro: IPR015940; Ubiquitin-associated domain"}],["rect",[339,94,466,108],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19935931;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_smart;translation_id=38994","title":"SMART SM00290; Positions: 179-234; Interpro: IPR001607; Zinc finger, UBP-type"}],["rect",[15,94,46,108],{"klass":["label","MYdPEMz0"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[800,116,963,130],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225805;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfam;translation_id=38994","title":"Pfam PF22562; Positions: 614-712; Interpro: IPR015940; Ubiquitin-associated domain"}],["rect",[340,116,467,130],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225807;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfam;translation_id=38994","title":"Pfam PF02148; Positions: 180-255; Interpro: IPR001607; Zinc finger, UBP-type"}],["rect",[161,135,438,149],{"title":"Pfam PF17807; Positions: 11-73; Interpro: IPR041432; Ubiquitinyl hydrolase, variant UBP zinc finger","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225803;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfam;translation_id=38994"}],["rect",[476,135,990,149],{"title":"Pfam PF00443; Positions: 308-792; Interpro: IPR001394; Peptidase C19, ubiquitin carboxyl-terminal hydrolase","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225806;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfam;translation_id=38994"}],["rect",[15,116,40,130],{"klass":["label","9wCoKKiv"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[798,158,961,172],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225811;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfscan;translation_id=38994","title":"PROSITE profiles PS50030; Positions: 612-709; Interpro: IPR015940; Ubiquitin-associated domain"}],["rect",[476,177,993,191],{"title":"PROSITE profiles PS50235; Positions: 308-795; Interpro: IPR028889; Ubiquitin specific protease domain","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225809;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfscan;translation_id=38994"}],["rect",[315,158,442,172],{"title":"PROSITE profiles PS50271; Positions: 156-266; Interpro: IPR001607; Zinc finger, UBP-type","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225808;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pfscan;translation_id=38994"}],["rect",[15,158,112,172],{"alt":"Brassica oleracea (Brassica oleracea var. oleracea)","klass":["label","4kNLkwCS"]}],["rect",[934,200,1193,214],{"title":"PROSITE patterns PS00973; Positions: 740-758; Interpro: IPR018200; Ubiquitin specific protease, conserved site","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225802;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_scanprosite;translation_id=38994"}],["rect",[477,200,736,214],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225801;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_scanprosite;translation_id=38994","title":"PROSITE patterns PS00972; Positions: 309-324; Interpro: IPR018200; Ubiquitin specific protease, conserved site"}],["rect",[15,200,112,214],{"klass":["label","o0UCSqTI"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[151,242,994,256],{"title":"PIRSF PIRSF016308; Positions: 1-796; Interpro: IPR016652; Ubiquitinyl hydrolase","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418487;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_pirsf;translation_id=38994"}],["rect",[15,242,46,256],{"alt":"Brassica oleracea (Brassica oleracea var. oleracea)","klass":["label","IPc3NXpJ"]}],["rect",[328,264,992,278],{"title":"PANTHER PTHR21646; Positions: 168-794; Interpro: IPR050185; Ubiquitin carboxyl-terminal hydrolase","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=20225812;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_hmmpanther;translation_id=38994"}],["rect",[15,264,58,278],{"klass":["label","lSNQGWvX"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[776,286,919,300],{"title":"Gene3D 1.10.8.10; Positions: 591-725","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418461;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_gene3d;translation_id=38994"}],["rect",[469,305,994,319],{"title":"Gene3D 3.90.70.10; Positions: 301-796","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418474;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_gene3d;translation_id=38994"}],["rect",[151,286,419,300],{"title":"Gene3D 3.30.40.10; Positions: 1-253; Interpro: IPR013083; Zinc finger, RING/FYVE/PHD-type","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19418458;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_gene3d;translation_id=38994"}],["rect",[15,286,52,300],{"klass":["label","21BV1Out"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[477,320,991,334],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19813064;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_cdd;translation_id=38994","title":"CDD cd02658; Positions: 309-793"}],["rect",[863,339,906,353],{"href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19813063;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_cdd;translation_id=38994","title":"CDD cd14388; Positions: 673-710"}],["rect",[800,339,848,353],{"title":"CDD cd14295; Positions: 614-658","href":"/Brassica_oleracea/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=Bo3g076130;pf_id=19813065;r=C3:28859825-28865028;t=Bo3g076130.1;track=domain_cdd;translation_id=38994"}],["rect",[15,320,34,334],{"klass":["label","d2QEiGEd"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}],["rect",[15,362,70,376],{"klass":["label","w3FSfpbz"],"alt":"Brassica oleracea (Brassica oleracea var. oleracea)"}]]
URL to turn this track on
Copy the above url to force this track to be turned on
Click on the star to add/remove this track from your favourites
Click on the cross to turn the track off
Click to highlight/unhighlight this track
NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).
URL to turn this track on
Copy the above url to force this track to be turned on
Click on the star to add/remove this track from your favourites
Click on the cross to turn the track off
Click to highlight/unhighlight this track
Protein domains and motifs from the TIGRFAM database.
URL to turn this track on
Copy the above url to force this track to be turned on
Click on the star to add/remove this track from your favourites
Click on the cross to turn the track off
Click to highlight/unhighlight this track
URL to turn this track on
Copy the above url to force this track to be turned on
Click on the star to add/remove this track from your favourites
Click on the cross to turn the track off
Click to highlight/unhighlight this track
Protein fingerprints (groups of conserved motifs) from the PRINTS database.
URL to turn this track on
Copy the above url to force this track to be turned on
Click on the star to add/remove this track from your favourites
Click on the cross to turn the track off
Click to highlight/unhighlight this track