Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bo8g108650.1

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Description

endonuclease/exonuclease/phosphatase family protein [Source:TAIR;Acc:AT1G11800](projected from arabidopsis_thaliana,AT1G11800)

Location

Chromosome C8: 38,776,250-38,777,761 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene Bo8g108650 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo8g108650.1	1293	430aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3DXW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	14	55	-	4.10.1060.10	-
Gene3D	56	95	-	2.30.30.380	-
CDD	163	427	-	cd09080	-
Pfam	165	420	Endonuclease/exonuclease/phosphatase	PF03372	IPR005135 [Display all genes with this domain]
Gene3D	157	428	Endonuclease/exonuclease/phosphatase superfamily	3.60.10.10	IPR036691 [Display all genes with this domain]
Superfamily	162	427	Endonuclease/exonuclease/phosphatase superfamily	SSF56219	IPR036691 [Display all genes with this domain]
PANTHER	32	427	Tyrosyl-DNA phosphodiesterase 2-like	PTHR15822	IPR051547 [Display all genes with this domain]
SMART	22	47	Zinc finger, RanBP2-type	SM00547	IPR001876 [Display all genes with this domain]
PROSITE profiles	60	89	Zinc finger, RanBP2-type	PS50199	IPR001876 [Display all genes with this domain]
SMART	62	86	Zinc finger, RanBP2-type	SM00547	IPR001876 [Display all genes with this domain]
PROSITE patterns	64	83	Zinc finger, RanBP2-type	PS01358	IPR001876 [Display all genes with this domain]
Superfamily	60	86	Zinc finger, RanBP2-type superfamily	SSF90209	IPR036443 [Display all genes with this domain]

Other features

Show entries

Show/hide columns

Feature type
Start
End

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Filter

Feature type	Start	End
Phobius	1	8
Phobius	1	25
Phobius	9	17
Phobius	18	25
Phobius	26	430
Seg	16	25
Seg	45	59
SignalP	1	22
SignalP GRAM NEGATIVE	1	22
SignalP GRAM NEGATIVE	1	25
SignalP GRAM POSITIVE	1	23
Alphafold	1	430
Ncoils	291	311

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