Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bo7g078630.1

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Description

plant UBX domain-containing protein 2 [Source:TAIR;Acc:AT2G01650](projected from arabidopsis_thaliana,AT2G01650)

Location

Chromosome C7: 29,893,703-29,895,246 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 22 domains and features.

Gene

This transcript is a product of gene Bo7g078630 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo7g078630.1	1395	464aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3DA54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	1	463	-	PTHR47694	-
Gene3D	178	263	-	1.20.58.2190	-
CDD	178	267	-	cd09212	-
SMART	184	251	-	SM00580	-
Gene3D	349	442	-	3.10.20.90	-
CDD	360	440	-	cd16119	-
Pfam	183	258	PUB domain	PF09409	IPR018997 [Display all genes with this domain]
Superfamily	182	246	PUB-like domain superfamily	SSF143503	IPR036339 [Display all genes with this domain]
PROSITE profiles	355	439	UBX domain	PS50033	IPR001012 [Display all genes with this domain]
Superfamily	330	439	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]
PROSITE profiles	125	152	Zinc finger C2H2-type	PS50157	IPR013087 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	1	96
MobiDBLite	14	50
MobiDBLite	51	76
Seg	18	28
Seg	47	60
Seg	62	81
Seg	160	175
Seg	220	239
Seg	346	359
Alphafold	1	464
Alphafold	1	464

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