Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bo4g105100.1

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Description

RWD domain-containing protein [Source:TAIR;Acc:AT3G60300](projected from arabidopsis_thaliana,AT3G60300)

Location

Chromosome C4: 26,304,499-26,306,222 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features and maps to 1 oligo probe.

Gene

This transcript is a product of gene Bo4g105100 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo4g105100.1	1029	342aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3BWP0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	112	194	-	SSF57850	-
PANTHER	1	331	E3 ubiquitin-protein ligase RNF25	PTHR13198	IPR039133 [Display all genes with this domain]
Pfam	4	110	RWD domain	PF05773	IPR006575 [Display all genes with this domain]
PROSITE profiles	8	114	RWD domain	PS50908	IPR006575 [Display all genes with this domain]
SMART	8	114	RWD domain	SM00591	IPR006575 [Display all genes with this domain]
Gene3D	1	116	Ubiquitin-conjugating enzyme/RWD-like	3.10.110.10	IPR016135 [Display all genes with this domain]
Superfamily	3	111	Ubiquitin-conjugating enzyme/RWD-like	SSF54495	IPR016135 [Display all genes with this domain]
SMART	121	188	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	121	189	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	117	202	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	211	232
MobiDBLite	271	342
MobiDBLite	320	342
Seg	3	16
Seg	268	305
Seg	306	317
Alphafold	1	342
Ncoils	277	297

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