Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bo4g045520.1

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Description

ubiquitin-specific protease 1 [Source:TAIR;Acc:AT2G32780](projected from arabidopsis_thaliana,AT2G32780)

Location

Chromosome C4: 10,491,239-10,494,318 reverse strand.

About this transcript

This transcript has 2 exons and is annotated with 19 domains and features.

Gene

This transcript is a product of gene Bo4g045520 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo4g045520.1	2991	996aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3BSN6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	34	141	-	SSF57850	-
Gene3D	179	421	-	3.90.70.10	-
Gene3D	767	995	-	3.90.70.10	-
Superfamily	197	994	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	199	993	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
PANTHER	81	994	Ubiquitin carboxyl-terminal hydrolase	PTHR21646	IPR050185 [Display all genes with this domain]
PROSITE profiles	199	996	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	200	215	Ubiquitin specific protease, conserved site	PS00972	IPR018200 [Display all genes with this domain]
PROSITE patterns	933	950	Ubiquitin specific protease, conserved site	PS00973	IPR018200 [Display all genes with this domain]
Gene3D	30	167	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
PROSITE profiles	33	161	Zinc finger, UBP-type	PS50271	IPR001607 [Display all genes with this domain]
SMART	80	132	Zinc finger, UBP-type	SM00290	IPR001607 [Display all genes with this domain]
Pfam	81	140	Zinc finger, UBP-type	PF02148	IPR001607 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	22
Seg	172	197
Seg	217	227
Seg	781	795
Seg	857	872
Alphafold	1	996

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