Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: Bo4g024400.1

.

Description

Ribosome biogenesis protein BOP1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A0D3BQ12]

Location

Chromosome C4: 3,748,608-3,751,941 reverse strand.

About this transcript

This transcript has 14 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene Bo4g024400 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo4g024400.1	2190	729aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3BQ12	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	392	429	-	PS50294	-
Pfam	130	385	BOP1, N-terminal domain	PF08145	IPR012953 [Display all genes with this domain]
SMART	130	385	BOP1, N-terminal domain	SM01035	IPR012953 [Display all genes with this domain]
PANTHER	5	729	WD repeat BOP1/Erb1	PTHR17605	IPR028598 [Display all genes with this domain]
HAMAP	17	728	WD repeat BOP1/Erb1	MF_03027	IPR028598 [Display all genes with this domain]
SMART	385	424	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	387	423	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	392	433	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	427	466	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	507	545	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	591	630	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	634	673	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	636	672	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	685	728	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	688	727	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE patterns	411	425	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	350	727	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	375	729	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	1	128
MobiDBLite	46	58
MobiDBLite	59	83
MobiDBLite	84	115
Seg	18	31
Seg	45	60
Seg	77	116
Alphafold	1	729

.

Personal Data