Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Bo2g009530.1

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Location

Chromosome C2: 1,995,233-1,997,266 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 18 domains and features.

Gene

This transcript is a product of gene Bo2g009530 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	Bo2g009530.1	1173	390aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0D3AIC0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	253	390	-	cd10539	-
PANTHER	134	390	Histone-lysine N-methyltransferase ATXR5/ATXR6	PTHR48458	IPR053114 [Display all genes with this domain]
PROSITE profiles	256	378	SET domain	PS50280	IPR001214 [Display all genes with this domain]
Pfam	267	378	SET domain	PF00856	IPR001214 [Display all genes with this domain]
Gene3D	162	390	SET domain superfamily	2.170.270.10	IPR046341 [Display all genes with this domain]
Superfamily	205	378	SET domain superfamily	SSF82199	IPR046341 [Display all genes with this domain]
Superfamily	67	123	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	75	125	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	78	122	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	77	123	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	78	122	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	43	127	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	20
MobiDBLite	1	38
Seg	6	37
Seg	58	72
Seg	162	179
Alphafold	1	390

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