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    Transcript: Bo1g158920.1

    Description

    methyl-CPG-binding domain 9 [Source:Projected from Arabidopsis thaliana (AT3G01460) TAIR;Acc:AT3G01460]

    Location

    Chromosome C1: 43,724,088-43,732,578 forward strand.

    About this transcript

    This transcript has 11 exons and is annotated with 38 domains and features.

    Gene

    This transcript is a product of gene Bo1g158920 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
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    NameTranscript IDbpProteinBiotypeUniProtFlags
    -Bo1g158920.166272208aa
     
    Protein coding
    		A0A0D3AG69 Ensembl Canonical

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
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    Domain sourceStartEndDescriptionAccessionInterPro
    PANTHER1212203-PTHR47162-
    Gene3D374478-3.30.160.360-
    CDD13281373-cd15519-
    Gene3D11111232Bromodomain-like superfamily1.20.920.10IPR036427 [Display all genes with this domain]
    Superfamily231309DNA-binding domain superfamilySSF54171IPR016177 [Display all genes with this domain]
    PROSITE profiles529667FY-rich, C-terminalPS51543IPR003889 [Display all genes with this domain]
    PROSITE profiles373426FY-rich, N-terminalPS51542IPR003888 [Display all genes with this domain]
    Pfam374408FY-rich, N-terminalPF05964IPR003888 [Display all genes with this domain]
    PROSITE profiles228297Methyl-CpG DNA bindingPS50982IPR001739 [Display all genes with this domain]
    Pfam229342Methyl-CpG DNA bindingPF01429IPR001739 [Display all genes with this domain]
    Pfam14111452WHIM1 domainPF15612IPR028942 [Display all genes with this domain]
    Pfam16621760WHIM2 domainPF15613IPR028941 [Display all genes with this domain]
    Superfamily76133Zinc finger, FYVE/PHD-typeSSF57903IPR011011 [Display all genes with this domain]
    Superfamily13161377Zinc finger, FYVE/PHD-typeSSF57903IPR011011 [Display all genes with this domain]
    PROSITE profiles80130Zinc finger, PHD-fingerPS50016IPR019787 [Display all genes with this domain]
    Pfam83127Zinc finger, PHD-fingerPF00628IPR019787 [Display all genes with this domain]
    PROSITE profiles13261376Zinc finger, PHD-fingerPS50016IPR019787 [Display all genes with this domain]
    Pfam13291373Zinc finger, PHD-fingerPF00628IPR019787 [Display all genes with this domain]
    SMART82128Zinc finger, PHD-typeSM00249IPR001965 [Display all genes with this domain]
    SMART13281374Zinc finger, PHD-typeSM00249IPR001965 [Display all genes with this domain]
    PROSITE patterns83127Zinc finger, PHD-type, conserved sitePS01359IPR019786 [Display all genes with this domain]
    PROSITE patterns13291373Zinc finger, PHD-type, conserved sitePS01359IPR019786 [Display all genes with this domain]
    Gene3D59131Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]
    Gene3D12891387Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

    Other features

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    • Feature type
    • Start
    • End
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    Feature typeStartEnd
    MobiDBLite120
    MobiDBLite151
    MobiDBLite14991521
    MobiDBLite15381567
    MobiDBLite15381571
    MobiDBLite21672208
    Seg6478
    Seg535546
    Seg876891
    Seg11381156
    Seg18211832
    Seg18701887
    Ncoils14511471
    Ncoils16291656

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