Brachypodium_distachyon - Ensembl Genomes 60

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About Brachypodium distachyon

Brachypodium distachyon, like Arabidopsis thaliana, has several features that recommend it as a model plant for functional genomic studies, especially in the grasses. It has a small, diploid genome (~355 Mb), small physical size, a short life-cycle and few growth requirements. Brachypodium is related to the major cereal grain species but is understood to be more closely related to the Triticeae (wheat and barley) than to the other cereals.

Taxonomy ID 15368

Data source Joint Genome Institute

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Genome assembly: Brachypodium_distachyon_v3.0

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Download DNA sequence (FASTA)

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Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree Pan-taxonomic tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Example variant

Variation

What can I find? Short sequence variants.

More about variation in Ensembl Plants

Download all variants - GVF - VCF - VEP

Variant Effect Predictor

Links

Links (Brachypodium distachyon)

Links (Triticum aestivum)

MIPS Wheat Genome Database
ENA study ERP000319: 454 pyrosequencing of the Triticum aestivum (bread wheat) genome to 5X coverage
ENA study ERP001415: 454 sequencing of Triticum aestivum (bread wheat) cv. Chinese spring cDNA samples from a pool of tissues, from plants under drought stress and from circadian-sampled leaves
Triticum aestivum ESTs at ENA
Triticum aestivum UniGene cluster sequences at NCBI

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