Description
RNA polymerase alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:25016660]
Gene Synonyms
AvsaCp073
Location
Scaffold Un67: 47,435-58,484 reverse strand.
About this gene
This gene has 30 transcripts (splice variants), 168 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| rpoA-202 | AVESA.00001b.r3.Ung0000573.2 | 6243 | 339aa | cds.AVESA.00001b.r3.Ung0000573.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1ATR7 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| rpoA-206 | AVESA.00001b.r3.Ung0000573.9 | 6412 | 239aa | cds.AVESA.00001b.r3.Ung0000573.9 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-214 | AVESA.00001b.r3.Ung0000573.15 | 5882 | 239aa | cds.AVESA.00001b.r3.Ung0000573.15 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-208 | AVESA.00001b.r3.Ung0000573.8 | 5749 | 239aa | cds.AVESA.00001b.r3.Ung0000573.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-209 | AVESA.00001b.r3.Ung0000573.6 | 5360 | 239aa | cds.AVESA.00001b.r3.Ung0000573.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-201 | AVESA.00001b.r3.Ung0000573.1 | 5220 | 339aa | cds.AVESA.00001b.r3.Ung0000573.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1ATR7 | - | - |
| rpoA-212 | AVESA.00001b.r3.Ung0000573.14 | 5219 | 239aa | cds.AVESA.00001b.r3.Ung0000573.14 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-217 | AVESA.00001b.r3.Ung0000573.17 | 4934 | 239aa | cds.AVESA.00001b.r3.Ung0000573.17 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-215 | AVESA.00001b.r3.Ung0000573.13 | 4830 | 239aa | cds.AVESA.00001b.r3.Ung0000573.13 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-205 | AVESA.00001b.r3.Ung0000573.7 | 4813 | 239aa | cds.AVESA.00001b.r3.Ung0000573.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-207 | AVESA.00001b.r3.Ung0000573.5 | 4697 | 239aa | cds.AVESA.00001b.r3.Ung0000573.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-219 | AVESA.00001b.r3.Ung0000573.20 | 4247 | 239aa | cds.AVESA.00001b.r3.Ung0000573.20 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-218 | AVESA.00001b.r3.Ung0000573.18 | 4212 | 239aa | cds.AVESA.00001b.r3.Ung0000573.18 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-213 | AVESA.00001b.r3.Ung0000573.12 | 4167 | 239aa | cds.AVESA.00001b.r3.Ung0000573.12 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-222 | AVESA.00001b.r3.Ung0000573.22 | 3775 | 239aa | cds.AVESA.00001b.r3.Ung0000573.22 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-220 | AVESA.00001b.r3.Ung0000573.19 | 3584 | 239aa | cds.AVESA.00001b.r3.Ung0000573.19 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-216 | AVESA.00001b.r3.Ung0000573.16 | 3476 | 239aa | cds.AVESA.00001b.r3.Ung0000573.16 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-221 | AVESA.00001b.r3.Ung0000573.21 | 3114 | 239aa | cds.AVESA.00001b.r3.Ung0000573.21 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-203 | AVESA.00001b.r3.Ung0000573.3 | 3004 | 259aa | cds.AVESA.00001b.r3.Ung0000573.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-226 | AVESA.00001b.r3.Ung0000573.26 | 2961 | 165aa | cds.AVESA.00001b.r3.Ung0000573.26 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-223 | AVESA.00001b.r3.Ung0000573.23 | 2680 | 150aa | cds.AVESA.00001b.r3.Ung0000573.23 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-227 | AVESA.00001b.r3.Ung0000573.27 | 2516 | 165aa | cds.AVESA.00001b.r3.Ung0000573.27 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-204 | AVESA.00001b.r3.Ung0000573.4 | 2481 | 147aa | cds.AVESA.00001b.r3.Ung0000573.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-224 | AVESA.00001b.r3.Ung0000573.24 | 2429 | 150aa | cds.AVESA.00001b.r3.Ung0000573.24 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-211 | AVESA.00001b.r3.Ung0000573.11 | 2420 | 239aa | cds.AVESA.00001b.r3.Ung0000573.11 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-225 | AVESA.00001b.r3.Ung0000573.25 | 2328 | 150aa | cds.AVESA.00001b.r3.Ung0000573.25 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-228 | AVESA.00001b.r3.Ung0000573.28 | 2194 | 165aa | cds.AVESA.00001b.r3.Ung0000573.28 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-229 | AVESA.00001b.r3.Ung0000573.29 | 2091 | 165aa | cds.AVESA.00001b.r3.Ung0000573.29 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
| rpoA-210 | AVESA.00001b.r3.Ung0000573.10 | 1974 | 239aa | cds.AVESA.00001b.r3.Ung0000573.10 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3G1AUH8 | - | - |
| rpoA-230 | AVESA.00001b.r3.Ung0000573.30 | 1145 | 135aa | cds.AVESA.00001b.r3.Ung0000573.30 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - |
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