Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT5G09230.2 SRT2-202

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Description

sirtuin 2 [Source:NCBI gene (formerly Entrezgene);Acc:830782]

Location

Chromosome 5: 2,871,365-2,873,789 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 224 variant alleles and maps to 31 oligo probes.

Gene

This transcript is a product of gene AT5G09230 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
SRT2-207	AT5G09230.7	1448	376aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
SRT2-206	AT5G09230.4	1558	271aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4KCI5	-	-
SRT2-205	AT5G09230.3	1414	324aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4KCI3	-	-
SRT2-204	AT5G09230.1	1397	373aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q94AQ6	-	-
SRT2-202	AT5G09230.2	1370	373aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q94AQ6	-	-
SRT2-201	AT5G09230.6	1337	271aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4KCI5	-	-
SRT2-203	AT5G09230.5	1322	354aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178UCZ7	-	-

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Variant table

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Variant table

This table shows known variants for this transcript. Use the 'Consequence Type' filter to view a subset of these.

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SIFTAll
SIFT

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ConsequencesAll
Consequences

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PTV
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PTV = Protein Truncating Variant
(0)

transcript ablation
(1)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(2)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(3)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(1)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(5)

5 prime UTR variant
(0)

3 prime UTR variant
(0)

non coding transcript exon variant
(20)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(22)

upstream gene variant
(0)

downstream gene variant
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LocationAll
Location

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5:2866365 - 5:2878789
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ClassAll
Class

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Only Somatic
Not Somatic
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(40)
SNP
(6)
deletion
(0)
genetic marker
(0)
indel
(4)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
Source

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(50)
The 1001 Genomes Project
(0)
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EvidenceAll
Evidence

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(11/11 on)
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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(50)
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Clinical SignificanceAll
Clinical Significance

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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(50)
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AA coordAll
AA coord

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Filter Other ColumnsAll
- Location
- Class
- Source
- Evidence
- Clinical Significance
- AA coord

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT

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