Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: AT5G05560.1 EMB2771-202

Description

E3 ubiquitin ligase [Source:NCBI gene (formerly Entrezgene);Acc:830439]

Location

About this transcript

This transcript has 34 exons, is annotated with 17 domains and features and is associated with 592 variant alleles.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
EMB2771-201	AT5G05560.2	6814	1807aa	AT5G05560.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BDT3 A0A654FYJ0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
EMB2771-202	AT5G05560.1	5294	1711aa	AT5G05560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2H1ZE59	-	-
EMB2771-203	AT5G05560.3	5283	1680aa	AT5G05560.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BDT7	-	-

Summary

Statistics

Exons: 34, Coding exons: 34, Transcript length: 5,294 bps, Translation length: 1,711 residues

Version

AT5G05560.1

Type

Protein coding

Annotation Method

Gene annotation by ARAPORT through a process of automatic and manual curation.