Transcript: AT4G21540.1 SPHK1-202

Description

sphingosine kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:828239]

Location

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 388 variant alleles and maps to 26 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SPHK1-202	AT4G21540.1	2134	485aa	AT4G21540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V174 Q8L7L1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
SPHK1-201	AT4G21540.3	2097	385aa	AT4G21540.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
SPHK1-203	AT4G21540.2	1767	275aa	AT4G21540.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JJK1	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,134 bps, Translation length: 485 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8L7L1

Version

AT4G21540.1

Type

Protein coding

Annotation Method

Gene annotation by ARAPORT through a process of automatic and manual curation.