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Arabidopsis thaliana (TAIR10)
Description

Josephin family protein [Source:NCBI gene (formerly Entrezgene);Acc:824580]

Location
About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 190 variant alleles and maps to 41 oligo probes.

Gene

This transcript is a product of gene AT3G54130 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT3G54130-201AT3G54130.11248280aa
 
Protein coding
A0A178VLA5 Q9M391 -Ensembl Canonical
Variants
  • loading
Markup
  • loaded
                                                                          
     1 TTAAATAATCTGTTAACTTGCTTCTTCTTCTTCTTTCTTCATCTTCATCTTCATCTTCGC     60
       ............................................................       
       ............................................................       

                                                                          
    61 TTCACAATCTCTTTGAGACTTTTGCATCGGAGCAATAATAATATATTCATCGCAAAATCA    120
       ............................................................       
       ............................................................       

                                                                          
   121 GTGAATTTTGATATTCAAATCTTAATCGGCGATGGAACGAACAAGCAACGGAGGAATGTT    180
       ...............................ATGGAACGAACAAGCAACGGAGGAATGTT     29
       ...............................-M--E--R--T--S--N--G--G--M--L     10

                                                                          
   181 GTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGGTGTTGCA    240
    30 GTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGGTGTTGCA     89
    10 --Y--H--E--V--Q--E--S--N--L--C--A--V--H--C--V--N--T--V--L--Q     30

                                                                          
   241 AGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACGGGAAGGA    300
    90 AGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACGGGAAGGA    149
    30 --G--P--F--F--S--E--F--D--L--A--A--V--A--A--D--L--D--G--K--E     50

                                                                          
   301 GCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATTTCTTAGC    360
   150 GCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATTTCTTAGC    209
    50 --R--Q--V--M--L--E--G--A--A--V--G--G--F--A--P--G--D--F--L--A     70

                                                                          
   361 TGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGCAAAAAGC    420
   210 TGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGCAAAAAGC    269
    70 --E--E--S--H--N--V--S--L--G--G--D--F--S--I--Q--V--L--Q--K--A     90

                                                                          
   421 TTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGCCTGCGCA    480
   270 TTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGCCTGCGCA    329
    90 --L--E--V--W--D--L--Q--V--I--P--L--N--C--P--D--A--E--P--A--Q    110

                                                                          
   481 GATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGTTTTGTAT    540
   330 GATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGTTTTGTAT    389
   110 --I--D--P--E--L--E--S--A--F--I--C--H--L--H--D--H--W--F--C--I    130

                                                                          
   541 AAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGCAACATTT    600
   390 AAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGCAACATTT    449
   130 --R--K--V--N--G--E--W--Y--N--F--D--S--L--L--A--A--P--Q--H--L    150

                                                                          
   601 ATCGAAGTTCTACCTTTCTGCGTTCTTAGACTCTCTCAAAGGCGCAGGATGGAGTATCTT    660
   450 ATCGAAGTTCTACCTTTCTGCGTTCTTAGACTCTCTCAAAGGCGCAGGATGGAGTATCTT    509
   150 --S--K--F--Y--L--S--A--F--L--D--S--L--K--G--A--G--W--S--I--F    170

                                                                          
   661 CATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAAGCTTCCAA    720
   510 CATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAAGCTTCCAA    569
   170 --I--V--K--G--N--F--P--Q--E--C--P--M--S--S--S--S--E--A--S--N    190

                                                                          
   721 TAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAACACGAGCTC    780
   570 TAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAACACGAGCTC    629
   190 --S--F--G--Q--W--L--S--P--E--D--A--E--R--I--R--K--N--T--S--S    210

                                                                          
   781 AGGTTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAATCAACAAAGACGGAATCA    840
   630 AGGTTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAATCAACAAAGACGGAATCA    689
   210 --G--S--S--A--R--N--K--R--S--N--D--N--V--N--Q--Q--R--R--N--Q    230

                                                                          
   841 GGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAAGATGATGACTTGAAGGC    900
   690 GGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAAGATGATGACTTGAAGGC    749
   230 --A--L--S--R--E--E--V--Q--A--F--S--E--M--E--D--D--D--L--K--A    250

                                                                          
   901 AGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCCAATCTCGGAGCTGTGGG    960
   750 AGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCCAATCTCGGAGCTGTGGG    809
   250 --A--I--A--A--S--L--L--D--A--S--A--A--E--A--N--L--G--A--V--G    270

                                                                          
   961 CACTTCTGAAAAGGAAACTGAGAAACAAAAGTAGCAGAGAAAATAGAGAACAAGTGTTAT   1020
   810 CACTTCTGAAAAGGAAACTGAGAAACAAAAGTAG..........................    843
   270 --T--S--E--K--E--T--E--K--Q--K--*-..........................    280

                                                                          
  1021 TGATGGAGGTGGTGGGATATTCACTTTTGTTTCTTTGTTTTGGTTTGTTATCAAGAGTTA   1080
       ............................................................       
       ............................................................       

                                                                          
  1081 TCAACAATTTTACATACAGAACAGAGAAAGAAAAAAGCTTACATCGAAAGATAGAAAACA   1140
       ............................................................       
       ............................................................       

                                                                          
  1141 GAGGATAATAAATGGTTTGTGGAATTGTTTTTGTTTGATTTTTTTACCATATTAAATTCT   1200
       ............................................................       
       ............................................................       

                                                                          
  1201 TCTGACAATCTTAAATTGAGGATAAAGATTCGACCTTTTCGAATTCAT               1248
       ................................................                   
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