Transcript: AT3G54130.1 AT3G54130-201
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Description
Josephin family protein [Source:NCBI gene (formerly Entrezgene);Acc:824580 ]
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AT3G54130-201 AT3G54130.1 1248 280aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A178VLA5 Q9M391 - A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"url":"/Arabidopsis_thaliana/Component/Transcript/Sequence_cDNA/sequence?g=AT3G54130;r=3%3A20042641-20044580;t=AT3G54130.1;db=core;time=1754323154546.546;adorn=only","provisional":{"legend":{"codons":{"c1":{"default":"#fff9af","config":"c1","label":null,"class":"c1","text":"Alternating codons"},"c0":{"text":"Alternating codons","label":null,"class":"c0","default":"#ffffff","config":"c0"}},"other":{"utr":{"text":"UTR","label":null,"class":"cu","default":"#ffdf33","config":"utr"}},"exons":{"exon1":{"class":"e1","label":"#1044ee","text":"Another exon","default":null,"config":"exon1"},"exon0":{"config":"exon0","default":null,"label":"#333333","class":"e0","text":"An exon"}},"_messages":[]},"seq":[{"style":[10]},-19,{"style":[10,-47,0]},{"style":[2,11]},{"style":[11]},{"style":[11,-30,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12]},{"style":[4,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4]},{"style":[4,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[4,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4]},{"style":[12,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,8,3,-1,9,-2,3,-2,9,-2,3]},{"style":[8,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},-1,{"style":[8,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8]},{"style":[3,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3]},{"style":[3,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},{"style":[3,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3]},{"style":[3,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3]},-1,{"style":[8,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8]},{"style":[8,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,7]},{"style":[1]},{"style":[7]},-1,{"style":[1,-47,10,0]},{"style":[10]},-19,{"style":[10,-47,0]},{"style":[10]},-19,{"style":[10,-47,0]}],"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#1044ee"],[32,"333333"],[-12,"f9af;color:#1044ee"],[12,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#ffdf33"],[22,"f9af"],[1,"fff"]]},"expect":["variants","variants"],"flourishes":{}}}
1 TTAAATAATCTGTTAACTTGCTTCTTCTTCTTCTTTCTTCATCTTCATCTTCATCTTCGC 60
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61 TTCACAATCTCTTTGAGACTTTTGCATCGGAGCAATAATAATATATTCATCGCAAAATCA 120
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121 GTGAATTTTGATATTCAAATCTTAATCGGCGATGGAACGAACAAGCAACGGAGGAATGTT 180
...............................ATGGAACGAACAAGCAACGGAGGAATGTT 29
...............................-M--E--R--T--S--N--G--G--M--L 10
181 GTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGGTGTTGCA 240
30 GTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGGTGTTGCA 89
10 --Y--H--E--V--Q--E--S--N--L--C--A--V--H--C--V--N--T--V--L--Q 30
241 AGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACGGGAAGGA 300
90 AGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACGGGAAGGA 149
30 --G--P--F--F--S--E--F--D--L--A--A--V--A--A--D--L--D--G--K--E 50
301 GCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATTTCTTAGC 360
150 GCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATTTCTTAGC 209
50 --R--Q--V--M--L--E--G--A--A--V--G--G--F--A--P--G--D--F--L--A 70
361 TGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGCAAAAAGC 420
210 TGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGCAAAAAGC 269
70 --E--E--S--H--N--V--S--L--G--G--D--F--S--I--Q--V--L--Q--K--A 90
421 TTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGCCTGCGCA 480
270 TTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGCCTGCGCA 329
90 --L--E--V--W--D--L--Q--V--I--P--L--N--C--P--D--A--E--P--A--Q 110
481 GATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGTTTTGTAT 540
330 GATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGTTTTGTAT 389
110 --I--D--P--E--L--E--S--A--F--I--C--H--L--H--D--H--W--F--C--I 130
541 AAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGCAACATTT 600
390 AAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGCAACATTT 449
130 --R--K--V--N--G--E--W--Y--N--F--D--S--L--L--A--A--P--Q--H--L 150
601 ATCGAAGTTCTACCTTTCTGCGTTCTTAGACTCTCTCAAAGGCGCAGGATGGAGTATCTT 660
450 ATCGAAGTTCTACCTTTCTGCGTTCTTAGACTCTCTCAAAGGCGCAGGATGGAGTATCTT 509
150 --S--K--F--Y--L--S--A--F--L--D--S--L--K--G--A--G--W--S--I--F 170
661 CATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAAGCTTCCAA 720
510 CATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAAGCTTCCAA 569
170 --I--V--K--G--N--F--P--Q--E--C--P--M--S--S--S--S--E--A--S--N 190
721 TAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAACACGAGCTC 780
570 TAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAACACGAGCTC 629
190 --S--F--G--Q--W--L--S--P--E--D--A--E--R--I--R--K--N--T--S--S 210
781 AGGTTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAATCAACAAAGACGGAATCA 840
630 AGGTTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAATCAACAAAGACGGAATCA 689
210 --G--S--S--A--R--N--K--R--S--N--D--N--V--N--Q--Q--R--R--N--Q 230
841 GGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAAGATGATGACTTGAAGGC 900
690 GGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAAGATGATGACTTGAAGGC 749
230 --A--L--S--R--E--E--V--Q--A--F--S--E--M--E--D--D--D--L--K--A 250
901 AGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCCAATCTCGGAGCTGTGGG 960
750 AGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCCAATCTCGGAGCTGTGGG 809
250 --A--I--A--A--S--L--L--D--A--S--A--A--E--A--N--L--G--A--V--G 270
961 CACTTCTGAAAAGGAAACTGAGAAACAAAAGTAGCAGAGAAAATAGAGAACAAGTGTTAT 1020
810 CACTTCTGAAAAGGAAACTGAGAAACAAAAGTAG.......................... 843
270 --T--S--E--K--E--T--E--K--Q--K--*-.......................... 280
1021 TGATGGAGGTGGTGGGATATTCACTTTTGTTTCTTTGTTTTGGTTTGTTATCAAGAGTTA 1080
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1081 TCAACAATTTTACATACAGAACAGAGAAAGAAAAAAGCTTACATCGAAAGATAGAAAACA 1140
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1141 GAGGATAATAAATGGTTTGTGGAATTGTTTTTGTTTGATTTTTTTACCATATTAAATTCT 1200
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1201 TCTGACAATCTTAAATTGAGGATAAAGATTCGACCTTTTCGAATTCAT 1248
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