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Arabidopsis thaliana (TAIR10)
Description

RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819689]

Location
About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 148 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene AT3G05250 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT3G05250-202AT3G05250.11036278aa
 
Protein coding
Q8GYA2 -Ensembl Canonical
AT3G05250-201AT3G05250.21115209aa
 
Protein coding
A0A1I9LQP6 --
AT3G05250-203AT3G05250.3791209aa
 
Protein coding
A0A1I9LQP6 --
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 CACAACGACGCCGTAACGCTGAATCAGCGCCAAGCGGAGAGAGACCTGAGTCAGTGAGTT     60
       ............................................................       
       ............................................................       

                                                                          
    61 GGTATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGATGGATCCGATTTT    120
       ...ATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGATGGATCCGATTTT     57
       ...-M--A--A--K--E--I--A--G--G--S--G--S--I--D--D--G--S--D--F-     19

                                                                          
   121 GATCCATGTCCTATTTGCCTTGGACAATTCCTCCGTGAATCCTACCTTGATACCTGTTTC    180
    58 GATCCATGTCCTATTTGCCTTGGACAATTCCTCCGTGAATCCTACCTTGATACCTGTTTC    117
    20 -D--P--C--P--I--C--L--G--Q--F--L--R--E--S--Y--L--D--T--C--F-     39

                                                                          
   181 CACAAGTTTTGTTTCAATTGTATAAAACAATGGATCAAAGTTGTTTCAAGCAAGGCCTCT    240
   118 CACAAGTTTTGTTTCAATTGTATAAAACAATGGATCAAAGTTGTTTCAAGCAAGGCCTCT    177
    40 -H--K--F--C--F--N--C--I--K--Q--W--I--K--V--V--S--S--K--A--S-     59

                                                                          
   241 AAGCAACGTTCCTCAGTGACATGTCCTCTCTGTAAGACAGAGAATTTATCCATCATCCAC    300
   178 AAGCAACGTTCCTCAGTGACATGTCCTCTCTGTAAGACAGAGAATTTATCCATCATCCAC    237
    60 -K--Q--R--S--S--V--T--C--P--L--C--K--T--E--N--L--S--I--I--H-     79

                                                                          
   301 AACTACGATGGATGTTCTTTTGAGCGGCATTATATCGACCCGAATATTCCAGATGGTTTT    360
   238 AACTACGATGGATGTTCTTTTGAGCGGCATTATATCGACCCGAATATTCCAGATGGTTTT    297
    80 -N--Y--D--G--C--S--F--E--R--H--Y--I--D--P--N--I--P--D--G--F-     99

                                                                          
   361 GTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGTTTCCTC    420
   298 GTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGTTTCCTC    357
   100 -V--L--T--K--E--Q--R--Y--R--L--Q--C--Y--Y--T--E--S--G--F--L-    119

                                                                          
   421 GCCGATGTATTCGATGTTGCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCGAACCGG    480
   358 GCCGATGTATTCGATGTTGCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCGAACCGG    417
   120 -A--D--V--F--D--V--A--R--F--W--K--L--Q--K--F--L--Q--P--N--R-    139

                                                                          
   481 TGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTGATGCAGGAGGAAGATGTTGAT    540
   418 TGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTGATGCAGGAGGAAGATGTTGAT    477
   140 -C--L--E--A--W--L--R--R--E--L--Q--A--L--M--Q--E--E--D--V--D-    159

                                                                          
   541 ATTGTTCTGCATCATTTGGTCGGTGTGATGGAATCCTTCTGCAAAAGAATCAAACAGAGA    600
   478 ATTGTTCTGCATCATTTGGTCGGTGTGATGGAATCCTTCTGCAAAAGAATCAAACAGAGA    537
   160 -I--V--L--H--H--L--V--G--V--M--E--S--F--C--K--R--I--K--Q--R-    179

                                                                          
   601 CGCAAACAAGAAACAAGAAGCGCAGAGACAACAAATCAAGAACAATTCAAAGCAGTTGTC    660
   538 CGCAAACAAGAAACAAGAAGCGCAGAGACAACAAATCAAGAACAATTCAAAGCAGTTGTC    597
   180 -R--K--Q--E--T--R--S--A--E--T--T--N--Q--E--Q--F--K--A--V--V-    199

                                                                          
   661 TCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGATTTGTGGATGAACTTGAA    720
   598 TCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGATTTGTGGATGAACTTGAA    657
   200 -S--E--A--A--R--P--F--V--M--A--R--T--D--R--F--V--D--E--L--E-    219

                                                                          
   721 CTCTTTCTGGCCGCGGGACTAAACTTGGAGGCTTATGATGCAATCTATAAGCAGGGTTTA    780
   658 CTCTTTCTGGCCGCGGGACTAAACTTGGAGGCTTATGATGCAATCTATAAGCAGGGTTTA    717
   220 -L--F--L--A--A--G--L--N--L--E--A--Y--D--A--I--Y--K--Q--G--L-    239

                                                                          
   781 GAGGGGAACAACCGAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTGGAAGAA    840
   718 GAGGGGAACAACCGAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTGGAAGAA    777
   240 -E--G--N--N--R--R--E--I--G--A--A--S--E--E--R--E--E--V--E--E-    259

                                                                          
   841 CATAATGTAAGAACACGAGTGACTCCTTATTTGTTTATCTTCGAGGAAGACTCAGACTGA    900
   778 CATAATGTAAGAACACGAGTGACTCCTTATTTGTTTATCTTCGAGGAAGACTCAGACTGA    837
   260 -H--N--V--R--T--R--V--T--P--Y--L--F--I--F--E--E--D--S--D--*-    278

                                                                          
   901 GACAAAACACTTATCACTTCTGTACCATATAAAGAAACTCATAACTTCGATTAATGATAT    960
       ............................................................       
       ............................................................       

                                                                          
   961 ACCAGTTTCGATTTGTTTGTTTTACTTTGTGTAATGCTAACGAAACCAACCATACCATTT   1020
       ............................................................       
       ............................................................       

                                                                          
  1021 TATTCTGTTCTCTTTT                                               1036
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