Arabidopsis thaliana (TAIR10)
Description

RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836739]

Location
About this transcript

This transcript has 4 exons, is annotated with 19 domains and features, is associated with 130 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene AT5G66070 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT5G66070-204AT5G66070.21173245aa
 
Protein coding
F4JZ26 -Ensembl Canonical
AT5G66070-203AT5G66070.31388214aa
 
Protein coding
A0A1P8BH13 --
AT5G66070-202AT5G66070.41316190aa
 
Protein coding
A0A1P8BH11 --
AT5G66070-201AT5G66070.11186221aa
 
Protein coding
A0A178UPF9 Q9FKX5 --
AT5G66070-205AT5G66070.5902221aa
 
Protein coding
A0A178UPF9 Q9FKX5 --

Protein domains for AT5G66070.2.

Cleavage site (Signalp)

Signal peptide cleavage sites predicted by SignalP.

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AFDB-ENSP mappings

Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings

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SignalP_GRAM_POSITIVE

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Coiled-coils (Ncoils)

Coiled-coil regions predicted by Ncoils.

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HAMAP

HAMAP families.

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Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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SFLD

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TIGRFAM

Protein domains and motifs from the TIGRFAM database.

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NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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SignalP_GRAM_NEGATIVE

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MobiDB lite

Intrinsically disordered regions predicted by MobiDB lite.

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PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

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PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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Transmembrane helices

Transmembrane helices predicted by TMHMM.

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Phobius

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Low complexity (Seg)

Low complexity peptide sequences identified by Seg.

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Superfamily

Protein domains and motifs from the SUPERFAMILY database.

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SMART

Protein domains and motifs from the SMART database.

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Pfam

Protein domains and motifs from the Pfam database.

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PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

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PANTHER

PANTHER families.

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Gene3D

CATH/Gene3D families.

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CDD

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Sequence variants (all sources)

Sequence variants from all sources

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Statistics

Ave. residue weight: 109.968 g/mol

Charge: 0.5

Isoelectric point: 6.5693

Molecular weight: 26,942.25 g/mol

Number of residues: 245 aa