Arabidopsis thaliana (TAIR10)
Description

ubiquitin-conjugating enzyme 22 [Source:NCBI gene (formerly Entrezgene);Acc:830390]

Location
About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 206 variant alleles and maps to 47 oligo probes.

Gene

This transcript is a product of gene AT5G05080 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
UBC22-201AT5G05080.31615251aa
 
Protein coding
A0A178UL56 Q9FF66 -Ensembl Canonical
UBC22-203AT5G05080.41464251aa
 
Protein coding
A0A178UL56 Q9FF66 --
UBC22-202AT5G05080.11344251aa
 
Protein coding
A0A178UL56 Q9FF66 --
UBC22-204AT5G05080.21193251aa
 
Protein coding
A0A178UL56 Q9FF66 --
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tgatacgctcctttagttaaataaaataaacatttgtctctatttctctt
1AT5G05080.2.exon11,500,7561,500,605--152
ATAAAAATTCAATAATTGAACCTCCTCTCTCTCTCTCTCTTCTCTCCCTTCTTCTTCTCC
GATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAGAAAGGGATCGCCTTTTCTCA
CTCTCTGCGGATTCTCAATTTTGGGCAAGAAG                            
 Intron 1-21,500,6041,500,084521
gcaagaacgtatgttgagatttctg..........cattaactttttgtggcttttgcag
2AT5G05080.4.exon21,500,0831,499,970-0114
AGTTTTTATCGCAATTGAGTCTTGAAGACCACAAGGATTTGATCACATTGGTGCTTCTGC
CTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATTTGCCATG      
 Intron 2-31,499,9691,499,860110
gtaattatctctccctctgtattcc..........tgattttgtcttctttgatgctcag
3AT5G05080.4.exon31,499,8591,499,71501145
GCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGT
CTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAA
ATATGTGCTGATATTGAAGGACCAG                                   
 Intron 3-41,499,7141,499,61897
gttcacaatcattgccgtatcaatt..........gttttcctactttgatggcatacag
4AT5G05080.4.exon41,499,6171,499,5401178
TTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTC
CACATTCGCCTCCCAAAG                                          
 Intron 4-51,499,5391,499,440100
gtatgcatgtcacttaattagattg..........taatatcttgggtttgacattccag
5AT5G05080.4.exon51,499,4391,499,32710113
GCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTA
ACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCT       
 Intron 5-61,499,3261,499,23889
gtaagatgtttaaccccttatgtat..........atctgtgttttgtacatgttaacag
6AT5G05080.4.exon61,499,2371,499,13402104
GTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGC
AAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAG                
 Intron 6-71,499,1331,499,04094
gtgagctatctactttggtttcaaa..........gcttatatactattactgtatgcag
7AT5G05080.2.exon71,499,0391,498,5532-487
GCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGA
GTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGC
AATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACA
CGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGA
AGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTT
GAAGAGACTATGATGATGCTATCACTCAGTGTCTTACGCTCTTTGAACCTAAACTGTTGT
TTCCTTTTTACTTGTAAGAGATCTGTTGTTTGAGGATTTTTCATTTCTGGGAAATAATAA
TGTTTGCCAATGAAGCCGAATGTTAAACATTTTGGTGTTCTAATCTACACATGGTTTTGC
TGAGTAA                                                     
3' downstream sequence
tcgtggataagacaaaagacacatcgacctctggaatagtcgtctgtatc..........