Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT4G05320.3 UBQ10-207

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Description

polyubiquitin 10 [Source:NCBI gene (formerly Entrezgene);Acc:825880]

Location

Chromosome 4: 2,718,189-2,720,048 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 102 domains and features, is associated with 342 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene AT4G05320 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
UBQ10-201	AT4G05320.2	2028	457aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V0T6 Q8H159	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
UBQ10-202	AT4G05320.6	1713	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-208	AT4G05320.4	1625	457aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V0T6 Q8H159	-	-
UBQ10-207	AT4G05320.3	1550	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-203	AT4G05320.1	1432	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-204	AT4G05320.5	1204	305aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A384KF74 J7FN14 Q3E7T8	-	-
UBQ10-206	AT4G05320.8	1147	305aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A384KF74 J7FN14 Q3E7T8	-	-
UBQ10-205	AT4G05320.7	923	153aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JGM3	-	-

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ttttcttcttcttcttctataaaacaatacccaaagagctcttcttcttc
1	AT4G05320.3.exon1	2,718,189	2,718,254	-	-	66	ACAATTCAGATTTCAATTTCTCAAAATCTTAAAAACTTTCTCTCAATTCTCTCTACCGTG ATCAAG
	Intron 1-2	2,718,255	2,718,564			310	gtaaatttctgtgttccttattctc..........gagtttttctgattaacagatgcag
2	AT4G05320.3.exon2	2,718,565	2,720,048	-	-	1,484	ATCTTTGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCCGACACC ATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGAGG CTTATTTTCGCCGGCAAGCAGCTAGAGGATGGCCGTACGTTGGCTGATTACAATATCCAG AAGGAATCCACCCTCCACTTGGTCCTCAGGCTCCGTGGTGGTATGCAGATTTTCGTTAAA ACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGTTCTGACACCATCGACAACGTC AAGGCCAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAGCAGAGGCTGATCTTCGCC GGAAAGCAGTTGGAGGATGGCAGAACTCTTGCTGACTACAATATCCAGAAGGAGTCCACC CTTCATCTTGTTCTCAGGCTCCGTGGTGGTATGCAGATTTTCGTTAAGACGTTGACTGGG AAAACTATCACTTTGGAGGTGGAGAGTTCTGACACCATTGATAACGTGAAAGCCAAGATC CAAGACAAAGAGGGTATTCCTCCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTT GAAGATGGCAGAACTTTGGCCGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTC TTGCGTCTGCGTGGAGGTATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACT TTGGAGGTGGAGAGTTCTGACACCATTGATAACGTGAAAGCCAAGATCCAGGACAAAGAG GGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGAAGA ACTTTGGCTGACTACAACATTCAGAAGGAGTCCACACTTCACTTGGTCTTGCGTCTGCGT GGAGGTATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTAGAG AGCTCTGACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCTCCG GACCAGCAGAGGTTGATCTTTGCCGGAAAACAATTGGAGGATGGTCGTACTTTGGCGGAT TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTGCGTGGAGGTATGCAG ATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAAGTGGAAAGCTCCGACACC ATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAGCAGCGT CTCATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACTTTGGCCGACTACAACATCCAG AAGGAGTCTACTCTTCACTTGGTCCTGCGTCTTCGTGGTGGTTTCTAAATCTCGTCTCTG TTATGCTTAAGAAGTTCAATGTTTCGTTTCATGTAAAACTTTGGTGGTTTGTGTTTTGGG GCCTTGTATAATCCCTGATGAATAAGTGTTCTACTATGTTTCCG
	3' downstream sequence						ttcctgttatctctttctttctaatgacaagtcgaacttcttctttatca..........

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