Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Export data

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: AT4G04210.1 PUX4-201

.

Description

plant UBX domain containing protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:825736]

Location

Chromosome 4: 2,029,855-2,031,942 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 20 domains and features, is associated with 368 variant alleles and maps to 41 oligo probes.

Gene

This transcript is a product of gene AT4G04210 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
PUX4-201	AT4G04210.1	1720	303aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V2K4 Q8RWU7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Exons

.

Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

loadingloaded

▼▲

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ccgttttaaccgtatatataataattaaagttatgtttacaaaaaatttg
1	AT4G04210.1.exon1	2,029,855	2,030,536	-	2	682	TAACTATAATTATTAGTTAATAAATCGTAACCGTAATAACCGTAACCTTAGTGATGCCTA AATTCTCTCATTAAAGCGTAGATAAACCGGTGTTAAACCATGAAACCATGAGATTTTTTC CCCCTCTCATTTGTGAAGTTGATTCTAAAATTTAATGAAAAAATAATACTACAGTAAGGT ATTAATGGGGGTGGAATATGAAGATATTATAAGCTTAGGAATATTAAAATAGAACAAGAA CAAAACGTCACTCCACAAGGAAAGTTACTAAAATTGACAAAACCACAAGTACCAACAAAT CTAAGTTTTGTATTCCTCCTTTTTAAGTTACATAATTCCCCAATTCCTCCACCATATCAC GCGCCCACGTGAATTAACCAGACACCACAAACCACACACATTAGTTATAACCTCCACGCG CTTAATCAGCGCGTATAACAAATGAACGTCTCTCTAGCGTTGTTCGTTTTGATATCTTCT CGACTTCTCCACTTCTTTAGATTTGATTCTTCTTCTCTGATCTCTGAAAAAACACAATGT CTTCGAAAGACAAGAAACCGTCGAAGCCATCGAGTAGTCGTGGTGGAATCCGAACTCTTT CCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCGATGGTCCACAAGAAT ACTACACAGGTGGTGAGAAAAG
	Intron 1-2	2,030,537	2,030,671			135	gtcagtcttgtttctatttcgcaag..........tgtttttattggtcttgtgttgcag
2	AT4G04210.1.exon2	2,030,672	2,030,948	2	0	277	TGGTATGTTAGTTCAAGATCCATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGC TAGACAACTAGGAGCTGTAGAAGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCAC TGGAACTGGTAGATTGCTTTCTGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCC TGTTGTTCACAACATTGTTTTCTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAG GAAATTGGATGATCCTGAGAATGCATCGTTTCTCGAG
	Intron 2-3	2,030,949	2,031,021			73	gtgaatgactttcatgtgaaactgt..........tgatttagttattgtgttcttatag
3	AT4G04210.1.exon3	2,031,022	2,031,117	0	0	96	AGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGATAGAAGAGCTCCGGTT CATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCT
	Intron 3-4	2,031,118	2,031,277			160	gtgagtcccctctctgctttatcca..........ttaccggtcttgtttgttattgtag
4	AT4G04210.1.exon4	2,031,278	2,031,942	0	-	665	GAAAGACAGAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAAT GAAGGTAGCGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACC GAACCAGCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACAG CTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAAC GACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTCGTTGAACTACCAGCTTCAG ACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTGGT CTCGCCAACTCTGTTGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTGTGGTTCTTTTT GTCTATCTATATGCATTATAATGAGATTTTCATAACTGTTGTAGTAACCAGGTCTTTAAA ATGTAAGTTACTTCTTCACTCTGTATACTCAGCATAAGCCGGCGGGGACTTGTGGTATAG TTTTTCTTAATTTATTGAAATTTTATAGTTTCATTATGCGTTTATGGGTTAAATACAGTG TTTCAAGAACAACTATATATAGTTATATATTATTAGTTTGGTAAGAGTATAATCAAGTGT CATAT
	3' downstream sequence						atgcatgtatatcattgttgtgttattcatcaaccaatagttactgggaa..........

.