We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
    Search »
    Arabidopsis thaliana (TAIR10) ▼

    Favourite species

    All species

    Recent locations

    Transcript-based displays

    Configure this page

    Custom tracks

    Export data

    Bookmark this page

    Transcript: AT2G47560.1 AT2G47560-201

    Description

    RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819369]

    Location

    Chromosome 2: 19,511,717-19,512,728 reverse strand.

    About this transcript

    This transcript has 1 exon, is annotated with 17 domains and features, is associated with 137 variant alleles and maps to 43 oligo probes.

    Gene

    This transcript is a product of gene AT2G47560 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    AT2G47560-201AT2G47560.11012227aa
     
    Protein coding
    		A0A178VQS7 O22255 -Ensembl Canonical

    Exons

    Download sequence
    Markup
    • loaded
    Show/hide columns
    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........taagaaaatatttgctataaatagagaagaggagctctaaaaccccaaac
    1AT2G47560.1.exon119,512,72819,511,717--1,012 
    ACTTTTATTAAAGAACTTGTCCACTGTCTTCTTCTGCCCATTTTACCATTTTGATTAGGC
TCTCTGTTTCTCTTTCTTGGTTCTAAAAGATATCCGTCACTCTTTAGTATTATGGGAATC
GGTGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGCCACACGTCTTCAGGCTACGCT
CTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTTCTATTCGTCGCCGTTATTATGATC
CTCTGCTTCCACAGCTACGCCCGTTGGTTATTCCGTCGTCACAACCGTCGCATTCGCCGC
CGTATTCGTTCTCACCTCCGCACTCTCTCCGCCTCACCCCGAGACCAAGCTCTCGACCAG
GCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCCAAGAATCCACCACCACCAGAA
GAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAGGAAGAAGACGAAGGCCGTCTT
CTTCCTAAATGTGGCCACTCTTTTCACGTCGACTGCATCGATACTTGGTTCCGTTCCAGA
TCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCGTTTCAGGTCATTGAAACCGGT
TCTTCTTCTTCTTCTTCGCCGTTGACATTTCCGACGGAGGGTTGCGAGAGAGAACCGATT
GACCTCGCCGGTATCATTGTGGATATTTCCAGAGAAGTTGAATTTGAAGGCTCAAATCCG
GGTCTACCCATCGAAAACGGATCAAAGTTTCCGGGTAGTCGGGTTTTGTCTTTAAAAAGG
CTATGGAGCATCTGATTGCGGGCGGGTAAATGGGTTTCTATTTTTTTCAAAAAACGCATG
AACTTTGACACGTGGAATTTATATCAGCACACGTGGCCGTTACTCCTGGGGACCACTGAG
CCTGAGCGTCTACTTCTAATTAGTCTAATCACATTAATTTGATTACCCGTTCATTATTAT
TAGATTTCGAAGAAAACCATTCGGTTGTACAATAGTAAGTTAAAGTTATTAC
    3' downstream sequence 
    aaatcgtattgaatcaggcaccactaaataattatttgattaaaaaaaca..........

    This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use

    I Agree