Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT2G40830.1 RHC1A-201

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Description

RING-H2 finger C1A [Source:NCBI gene (formerly Entrezgene);Acc:818680]

Location

Chromosome 2: 17,042,623-17,044,915 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 155 variant alleles and maps to 36 oligo probes.

Gene

This transcript is a product of gene AT2G40830 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
RHC1A-203	AT2G40830.4	2196	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O22197	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
RHC1A-204	AT2G40830.2	1662	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O22197	-	-
RHC1A-202	AT2G40830.3	1565	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O22197	-	-
RHC1A-201	AT2G40830.1	1553	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O22197	-	-

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........aaaattagcagacgtagggttgacttaaaaaagactcttattacattagt
1	AT2G40830.4.exon1	17,042,623	17,042,783	-	-	161	CGACAAGTAAAAAACACGTGGCATATATTGTGCGTTCGTAGAGACTGTAATAAAGACGGA GAGATTCTTCTAGAGTCAGTTCTTCTTCTTCATCCTCTTCTTCCCCCCAAATCCTCTCTC GCTAGGGTTTCTCATTCCGATCCATAATTCTAGATGTCGAG
	Intron 1-2	17,042,784	17,043,523			740	gtattcttttgattgagctccgctt..........tactaacttatacccacttttgcag
2	AT2G40830.2.exon2	17,043,524	17,044,915	-	-	1,392	GTTTTTAACTGAGACCTGTCAAATAAGCTAAAGCTTCTTCTAAGAGCTTCAAGGAAAGCA TTGCATTGTTGTGGTCTTGTTTGTGTCCACAGAAGGAAAGAAGAGTGAGAAGCTCAGGAT GTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGTCAGCGTGCTGTCCGCCTTCACGG CCAAGAGCCTGTATGCTTTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGCTCA AGCCAGCCCCTTTGATATGTTTAGATCCCACAGGGGTGTTGTAGAACGTGATCAGACTTT TGATCTCATGGATGCTTTCTCTGTGTTTATGAGGAACCGCTTAGCTGAAAGGAGCCACGA CAGAGAAATCAGAGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGGTCTGGCCCC TTTGTTGATCTTTGGTGGTCAAGTCCCTTATAGACTAACTGGCGACAATGCAGTCGAAGC CCTCTTCAATGGCGGCTCCCCTGGCATTGGCATCACACGTGGTAACACCGGCGACTACTT CTTCGGTCCCGGCCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTACTCGCCGAGG CCCACCACCCGCACCGAGATCAGCAATAGACGCATTGCCAACTATCAAGATCGCGCAGAG GCATCTTAGGTCATCGGACTCGAATTGTCCCGTGTGCAAAGACGAATTCGAACTGGGATC AGAAGCGAAACAGATGCCGTGTAACCACATCTATCATTCTGACTGCATTGTCCCGTGGCT GGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAGCGGACCTTC AAGCAGTCAAAACAGAACCACCCCTACCAGAAACTACAGAAGCAGTAGTAGTAGTAGTAG TAGTAACAGTCGTGAGAACGGGAATGAAAGAAGGAATCCTTTCTCTTCCTTCTGGCCATT CCGTTCGTCAGGTTCAAGCTCAAGCTCCACTCAAAACCGTGGAGGCACAAGAAACTCGGA TACAAGCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATATATGGGTTA CAGTGGCTGGCCTTTTGATTACTAAAAGTCTAAAAGTGAGCTAAAACAAATCTTTGGTCT CACTTTGGTCTCTTTACTTAAATATGCTTGTGATTCTGCATATGCCTTGTGCTTCACTCT CTATCTCTCTCACTCTCTTTTATCAACATAAATAATGGAGAACTGTATTTGTTACTGTAG ATTTTCTTTCTCTGTTAAAAACGAGTTCATCATTTTCTATATGCTTTGTTAAATATGTCA TTTTAGTTGGGTTTTTGAAAATGGTTGAAATAGATTTTTGAGTTGATCGATAAATAAATA AATGAAAACGTC
	3' downstream sequence						tggacactcttgagcgatctatcagtatctcgtgatcttcttcaatacta..........

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