Arabidopsis thaliana (TAIR10)
Description

ubiquitin-specific protease 19 [Source:NCBI gene (formerly Entrezgene);Acc:817000]

Location
About this transcript

This transcript has 11 exons, is annotated with 23 domains and features, is associated with 333 variant alleles and maps to 38 oligo probes.

Gene

This transcript is a product of gene AT2G24640 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
UBP19-201AT2G24640.12592672aa
 
Protein coding
Q9SJA1 -Ensembl Canonical
UBP19-202AT2G24640.22604502aa
 
Protein coding
C0Z3D8 --
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tgaacaaagattttaattggcccattctctcattctctctttaactctat
1AT2G24640.1.exon110,479,45410,479,091-2364
AAAACACAGAGCAAAGAAAAAACAGAGGAGGTTGATTCTCTTTGGCATCTCCGAATCGAA
TCTGAGAAGAGAAGAGGAAGAAAAACGAAGATCGATGTTCGAGAGGGAATTAGATGCATG
AAGTTGGATTATTTGTGGATCTGAATTCCTTCACGCAGCTTATATTGACGCTCTTCTTTG
TCTCTATCGGTCTTCTCTACTTTGTTAAAAGAACGGCAGCCAAGTACTTCGAGGTCGGTG
GTGGCTCCGGTGGTTTCGATAGAGACCATCGCCGAGATTTCATGGTTTCCGACACGGCTG
AATGTTCTGTCTGTGGGAAGGCTACTACCAAAAAGTGCTCTCGCTGCAAATCTGTGAGAT
ACTG                                                        
 Intron 1-210,479,09010,478,739352
gtatgttgaaaagattcaagtttgc..........ttttgcctctgttctttggtactag
2AT2G24640.1.exon210,478,73810,478,53420205
CTCTGCGGCATGCCAAACGTCAGATTGGAAATCAGGACATAAACTAAAATGCAAGGGGTT
TCGGAGTACTGACTCATCACCAGTGAGAAGAGATGATATCGATTTCGAAGCTTCTCTGTT
TGGGAATAGATCTGCTTCTAAGAAGACTAGGATTGCATTGGTTCCTCAACAGAGCCAAAG
CAAAGCTACCCTCAAGCCAACAGAT                                   
 Intron 2-310,478,53310,478,44391
gtaatggtcctcgttttagtaatct..........gaatcttgtttgcattattctgcag
3AT2G24640.1.exon310,478,44210,478,3540289
GTTCTTTTCCCATACGAAAGTTTTGTTAGATATTATAACTGGGACAGACCAATAATGGCT
CCTTGTGGGCTCACCAATTGTGGAAACAG                               
 Intron 3-410,478,35310,478,26193
gtttttgttcatctggtttctagtg..........ttctgttatgtcaatactctttcag
4AT2G24640.2.exon510,478,26010,478,1752186
TTGTTTCGCTAATGTGGTTCTACAATGCCTTTCCTGGACACGCCCTCTTGTTGCTTACCT
TCTGGAGAGAGGCCACAAAAGAGAAT                                  
 Intron 4-510,478,17410,478,08095
gtaatagtttcttcgagaaatttca..........tttatttctatgttttggttaacag
5AT2G24640.2.exon610,478,07910,477,91712163
GTAGGCGAAATGATTGGTGCTTCTTATGCGAATTTGAAAATCATCTTGACAGAGCAAACT
ATAGCCGGTTTCCTTTTTCACCAATGAACATTATCTCGCGGCTGCCTAATATTGGTGGAA
ATCTTGGGTATGGGAGACAGGAGGATGCTCATGAGTTGATGAG                 
 Intron 5-610,477,91610,477,83087
gtcagctattgttccttgttggtgt..........tgcttttaaatttcatgtgatttag
6AT2G24640.2.exon710,477,82910,477,70620124
GTTTGCAATTGATATGATGCAATCTGTTTGCCTCGACGAATTTGGTGGAGAAAAAGTGGT
GCCTCCTCGCGCCCAAGAGACAACACTTATTCAATATATATTTGGTGGTCTCCTTCAGTC
ACAG                                                        
 Intron 6-710,477,70510,477,146560
gtgtgttttcttatcccagtagcag..........ttgctgcattttaatgattttgcag
7AT2G24640.2.exon810,477,14510,476,98802158
GTCCAGTGTACTGCTTGCAGTAATGTTTCTGACCAATATGAAAATATGATGGATTTAACT
GTTGAGATCCATGGGGATGCGGTATCATTGGAGGAATGTCTCGATCAGTTTACAGCTAAA
GAATGGCTTCAGGGAGATAACTTATACAAATGTGATAG                      
 Intron 7-810,476,98710,476,90286
gtattgtatccctcctgaatcctta..........tcaaacttttgtatttcttttccag
8AT2G24640.2.exon910,476,90110,476,8172085
ATGTGATGACTATGTGAAAGCATGCAAGCGCCTTTCAATTCGTTGTGCTCCAAATATTCT
TACAATTGCCTTAAAAAGATTCCAG                                   
 Intron 8-910,476,81610,476,717100
gtttgggctccattatcttcccttt..........ctaattaatgtgaaactatgtgcag
9AT2G24640.2.exon1010,476,71610,476,50400213
GGTGGGAGATTCGGTAAACTGAACAAAAGAATTAGTTTTCCTGAGACATTTGATCTAGGC
CCTTACATGAGCGGTGGAGGAGAAGGATCAGATGTATACAAACTCTACGCTGTGATTGTT
CATCTAGATATGTTGAATGCTTCATTTTTCGGCCATTACATATGCTATGTCAAGGACTTC
CGTGGAAACTGGTATAGAATAGACGATTCTGAG                           
 Intron 9-1010,476,50310,476,379125
gtaagaatcatcttctgccaccgtt..........tgatcccgtctaaaaatactcgcag
10AT2G24640.2.exon1110,476,37810,476,3170262
GTGGAAAAGGTTGAACTAGAAGATGTCCTTTCTCAACGAGCATACATGCTCCTCTACAGC
AG                                                          
 Intron 10-1110,476,31610,476,196121
gtagagcctttcatttttcttgaca..........attacgatatctggtattggtgcag
11AT2G24640.1.exon1110,476,19510,475,1532-1,043
GGTTCAGCCCAGACCATCAAATCTTAGATCCGAAGAAAGTCAAGATGAGAAGAAAACAGA
TACATTGAACACAGAATCTAACCAAGATGGCTCTGTTGAGAGTTCCGGGGTGGGAACAAA
TGACACAAGTGTGTCCTCGCTGTGTAACGGCATCATCTCACATTCAGAAGACCCTGAATA
CGAAAAAGAATCATCATTGTCAGCATCCGTACCAGTCTCTGAAGAAGGAAAGGAAGTTGA
CGTAAAGGTTGATACAGTAGATTCTGAATCAAACCGTTCTATTGACATGGAACATGATTC
TGGAACAGATCATCAAGAAGAAGAAGCAAATGGGAAAGAAGATCCAACGGTTGAAAATCT
GGCTGTTGATTCTTCTTGTTTGGACATTACTACTCCATCTCCATCTGCTGCTACAGAGTT
CATACCTCAGGAGAACGAACGTTCAGACACCGAGTCCAAACCTCTGGAGAAAGAACATTC
AGACACCGAGTCCAACAAACCGCTGGAGAAAGAACATTTAGACAGCGAGTCCAAACCCCT
GGAGAAAGAACATTCAGACACCGAGATGATCGATGCTCAATGATTCTAAAGGGATGGTGG
TGGAATCACAAACATTTTTCATGGCTCTTGAAAATCAACAAGGGCGCTTCTAACTTAACA
ATAATGCTGCAAAAAAATTGCTTTAGACACTGCAATTTCTGGTGTCTGAAGGATATATAG
AATTTGTTGGATCCTGGAGTTTTCCATATCTAGAAGAAATTTTTAGGGTTCGTACTGGTG
AGAACTATAGAGCTTACAAAGCCAGGATTGGTACTTTATTAGTCATATGAGATAGAAACT
TCAGGATCGGTTAAGTTATTCTTTTGATTTTTATTTCTCTGTTAAAATACAATTGAACCC
AAAAGCTCTCATAGCTTGAAAGACTAATGGAGGACCACATTGTCAACTTTGTGGTTGATT
CAAGTTATTTTGTTTGTTTGTTCGGCTAGTTTTATATAGTACTTAATGTGGGAAAATGTG
CATAACGAGCCGAACAAGTTAAG                                     
3' downstream sequence
aacaaatgaaaaaaatgttgaaagagaatttaaacttttacggtaacctc..........