Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT2G23780.3 AT2G23780-202

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Description

RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910]

Location

Chromosome 2: 10,122,566-10,124,669 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 18 domains and features, is associated with 249 variant alleles and maps to 34 oligo probes.

Gene

This transcript is a product of gene AT2G23780 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT2G23780-203	AT2G23780.2	1874	227aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O64824	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT2G23780-201	AT2G23780.1	1425	227aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O64824	-	-
AT2G23780-202	AT2G23780.3	1325	227aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O64824	-	-

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........aattaatataatcggcccaataattaatcaaaacttccaaagaaaatata
1	AT2G23780.2.exon1	10,124,669	10,124,474	-	-	196	TGGAAAAAAAACGAGAAAAACCAAAAGTCAGATATAGCCTGGAACTTTCTTTCCCAACAA CAGTAAGACTCTGTTTTTTCCCAAGATGTCTGGTTTCCTCTTTTGTTTCGTCCAAATCTC TACTTTTTAGGGATCTTGTCCTTCTCTTTTCTGCTGATTAAAACCCTCGAATTTGCTCCA ATTCGACGCGAAAAAG
	Intron 1-2	10,124,473	10,124,244			230	gtaagttttgctctttaatttcact..........tttcaattttttttttttgaattag
2	AT2G23780.1.exon2	10,124,243	10,123,523	-	-	721	GGCATTGAGATGGTGAATGGAGAATCATCAACTAGTACGTCTTACTCTGATAGTAACAAT GACACAAATGATCAAGGAGGAGACTTTGAATGTAACATTTGTTTCGAACTAGCTCAAGAT CCGATTGTCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCAC CACCATTCACATTCTCAAGAATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTT GTTCCTCTTTACGGTAGAGGCAAGAACCAGACTGACCCGAGATCAAAACGTTATCCGGGT TTACGGATTCCTAACCGACCAACAGGTCAAAGACCTGAGACTGCTGCTCCTCCTCCTCAG CCTGAAGCTGCGAGTAATTTTTTCAACTACGGTATTGGTTTGATGGGTGGAATTATGCCG ATGATGGCGACTACGAGGTTTGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTACCTTCT TTGTTTAACTTTCAGTTTCATGGATTTCATGATGCTACGCTTTATGGTTCAACACCGGGT TATCCTTACGGTGGTTATCATAACGGTTTCCGTGGAGTTCCTCCTCGTGGACAAGAGCGT CCTATGGCTCGTGGAGGAAACCAAAGTGATGCATTTCTGAAGAATATCCTCTTTTTTGTT GGAATCTGTGTGGTGATATTTCTCATCTGGTGAAAACGAATCACATTTGGTGTATTTCCA G
	Intron 2-3	10,123,522	10,122,974			549	gtatgatcaaacttacttacttggt..........tgttcttgtgagttgattcacgtag
3	AT2G23780.3.exon3	10,122,973	10,122,566	-	-	408	TGGACTGCTGGGACAGAACATGACGATAAGGGAATCACACTCCGCGATTCTTGTTCTTCT TCTGATCTCTCAGATCTCGAATTCACTCTGTTTACTCGATAGTTTGTTAGGTGTTCACAC ATTGCTAGATAGTTGTAGATTGATGCTAAATTGCTAATATCGAAACAGTGACCCTAGGGA TGACTTCTAGAGCATCACTTACCCGTCCTTGGCTTAAACCAGTCTCAACTACCTCTCCCT TTGTAAATAAACTTTTCAACATGTAAAATGTCATCTTCTGCGTGACGGCGTTGCAGACAA CAATGACCACCACTATAGGTAAGTTTTGCTTTAGTGCTATTCCATATTGTTGTTCTGACA ATAATAACCTAGAATCCTTCATGGTTTGAGCTCATGTTGGGTCGTAGT
	3' downstream sequence						gagaatcaagaaatgaccaatctttttctcagcagtatgatatgaatatg..........

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