Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT1G61620.1 AT1G61620-201

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Description

phosphoinositide binding protein [Source:NCBI gene (formerly Entrezgene);Acc:842458]

Location

Chromosome 1: 22,737,475-22,739,443 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 363 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene AT1G61620 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT1G61620-201	AT1G61620.1	1345	310aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WN49 Q9SY88	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........actcttgctgaaaaaaacaaatggtaataattaggaaccgttagattaga
1	AT1G61620.1.exon1	22,737,475	22,737,891	-	2	417	TTCATATCGGACGGTAAAGGCTGTGATACCATCACCGACTTACATGAGAACGAAACACTG GAAAACTCAATTCCCCAATTTCTCCAATCTGAGAAAATAGGGTTTCCGATTTGGATCCTT AATTCAGACACCTGACTCGTCTTCTCATCCTACCCCCAATTCAATATTCGTCGCCAATAT GCCGCAAAGACACTCGAAGAACAACAATGATCTTGCGTATTTCACTTACGACGAGAAGAA GAAGTTAGGTTATGGAACTCAGAGAGAGAGATTGGGGAGAGACTCGATCAAACCCTTTGA TGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGATCCGATGTGTTGCCATAAGGGTCATGT CTTTTGCAGAGAGTGTATACTTGAATGTTTCCTTGCTCAGAAGAAAGATATCCAAAG
	Intron 1-2	22,737,892	22,738,515			624	gtataaactttttggagttttcttt..........atatgtagtgctgagatgtctatag
2	AT1G61620.1.exon2	22,738,516	22,739,443	2	-	928	GAGGCTTGCTGCACATTCGTCTCAAAAGAAGCAAGATAAGGATGAAGAAGAAGAGAGGCT AATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGATCAGCAAAACCATAGTGCAATGCC TCGAAACAGTGACAAGAATCACAACGAAGATAAGAATGGTTTTCATGGGGCAAACAGTGT GAAGACGACTTCCTTTGAAGAAGAAGCGCTTAGGACAATGAAAGCCTTCTGGCTCCCATC AGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCAGAAACTCACACAGTCTGTCCAGA GGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCAATTCGTTTCACAGAAGACAACAG CGAAGAGGAAGAGACCAAGACAAAATCAGCATCTTCAAGCTCTTATGATAAATCCTACAT CTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATGTCCCTCGTGGCACTTAGCTCATG CGGACATGTTTTCTGCAAGAAGTGTGCTGAGAAGTTTATGCCCGTCGACAAAGTCTGTCT TGTGTGTGACAAACCTTGCAAGGATAGGAACTTGGTTGGGTTAAAGAAAGGAGGCACGGG TTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAGTACAAGCATTTGGGTAGTGGATC TGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGATGTAACCACATCAAATGTTCTGTTCC AGTTACAGAAAATATCCTTGATTTTGTAATACTTATGGCTTGTATCCTTTGCTACAACTA AGAGACGCTGCTTTCTCCATTTTGGCTCTTGGTTTGTCCTTTTGATCGGATCCTATTTGT GTTTCTTCCCTACGGAGATCAAATGGAAATTTAACATTTAAGTAATTGATCAATTCAAAT ATTCTTCTTTTAGGCTATGAACATGCAG
	3' downstream sequence						agatagaaatgatcaatgagctgttcaaaatattggcccataaattatct..........

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