Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT5G66620.1 DAR6-203

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Description

DA1-related protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:836794]

Location

Chromosome 5: 26,588,585-26,592,006 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 29 domains and features, is associated with 340 variant alleles and maps to 24 oligo probes.

Gene

This transcript is a product of gene AT5G66620 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
DAR6-203	AT5G66620.1	1935	644aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9FJX8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
DAR6-204	AT5G66620.4	2455	635aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B9V9	-	-
DAR6-202	AT5G66620.3	2327	635aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B9V9	-	-
DAR6-201	AT5G66620.2	2185	506aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B9X5	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	282	328	-	2.10.110.10	-
CDD	286	341	-	cd09396	-
PANTHER	159	642	Protein DA1-like	PTHR24209	IPR045218 [Display all genes with this domain]
Pfam	428	642	Protein DA1-like domain	PF12315	IPR022087 [Display all genes with this domain]
SMART	38	57	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
SMART	64	84	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
Pfam	119	135	Ubiquitin interacting motif	PF02809	IPR003903 [Display all genes with this domain]
PROSITE profiles	119	138	Ubiquitin interacting motif	PS50330	IPR003903 [Display all genes with this domain]
SMART	119	138	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
SMART	146	165	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
SMART	181	200	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
SMART	209	228	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
Pfam	244	258	Ubiquitin interacting motif	PF02809	IPR003903 [Display all genes with this domain]
PROSITE profiles	244	263	Ubiquitin interacting motif	PS50330	IPR003903 [Display all genes with this domain]
SMART	244	263	Ubiquitin interacting motif	SM00726	IPR003903 [Display all genes with this domain]
PROSITE profiles	284	355	Zinc finger, LIM-type	PS50023	IPR001781 [Display all genes with this domain]
SMART	285	340	Zinc finger, LIM-type	SM00132	IPR001781 [Display all genes with this domain]
PROSITE patterns	286	320	Zinc finger, LIM-type	PS00478	IPR001781 [Display all genes with this domain]
Pfam	286	323	Zinc finger, LIM-type	PF00412	IPR001781 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	572	589
MobiDBLite	572	591
Phobius	1	505
Phobius	506	525
Phobius	526	644
Seg	75	92
Seg	114	130
Seg	564	589
Ncoils	59	93
Ncoils	106	126

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