Transcript: AT5G37490.1 (AT5G37490-201) - Domains & features - Arabidopsis_thaliana

Description

ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833727]

Location

About this transcript

This transcript has 1 exon, is annotated with 12 domains and features, is associated with 316 variant alleles and maps to 40 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT5G37490-201	AT5G37490.1	1723	435aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5PNY6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	18	106	-	SSF57850	-
Gene3D	124	428	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	147	415	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
PANTHER	27	416	E3 ubiquitin-protein ligase PUB22/23/24-like	PTHR22849	IPR045185 [Display all genes with this domain]
CDD	32	83	PUB protein, U-box domain, plant	cd16664	IPR045210 [Display all genes with this domain]
PROSITE profiles	30	104	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	31	101	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	34	97	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
Gene3D	18	107	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Transcript: AT5G37490.1 AT5G37490-201