Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT5G01660.2 AT5G01660-201

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Description

influenza virus NS1A-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830423]

Location

Chromosome 5: 244,250-249,207 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 431 variant alleles and maps to 44 oligo probes.

Gene

This transcript is a product of gene AT5G01660 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT5G01660-202	AT5G01660.1	2558	656aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4K9G6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT5G01660-201	AT5G01660.2	2454	656aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4K9G6	-	-
AT5G01660-203	AT5G01660.3	1968	515aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BDS4	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Pfam	507	642	-	PF24681	-
PANTHER	9	654	DCD domain-containing protein NRP-like	PTHR46034	IPR044832 [Display all genes with this domain]
PROSITE profiles	16	149	Development/cell death domain	PS51222	IPR013989 [Display all genes with this domain]
SMART	16	149	Development/cell death domain	SM00767	IPR013989 [Display all genes with this domain]
Pfam	19	146	Development/cell death domain	PF10539	IPR013989 [Display all genes with this domain]
SMART	372	420	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
Pfam	410	455	Kelch repeat type 1	PF01344	IPR006652 [Display all genes with this domain]
SMART	421	468	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
Pfam	462	501	Kelch repeat type 1	PF01344	IPR006652 [Display all genes with this domain]
SMART	469	515	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
SMART	516	562	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
SMART	563	609	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
SMART	610	656	Kelch repeat type 1	SM00612	IPR006652 [Display all genes with this domain]
Gene3D	352	507	Kelch-type beta propeller	2.120.10.80	IPR015915 [Display all genes with this domain]
Superfamily	372	654	Kelch-type beta propeller	SSF117281	IPR015915 [Display all genes with this domain]
Gene3D	508	656	Kelch-type beta propeller	2.120.10.80	IPR015915 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	172	224
MobiDBLite	173	186
MobiDBLite	190	210
Seg	190	210

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