Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: AT4G05320.7 UBQ10-205

.

Description

polyubiquitin 10 [Source:NCBI gene (formerly Entrezgene);Acc:825880]

Location

Chromosome 4: 2,718,170-2,720,308 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 35 domains and features, is associated with 379 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene AT4G05320 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
UBQ10-201	AT4G05320.2	2028	457aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V0T6 Q8H159	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
UBQ10-202	AT4G05320.6	1713	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-208	AT4G05320.4	1625	457aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V0T6 Q8H159	-	-
UBQ10-207	AT4G05320.3	1550	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-203	AT4G05320.1	1432	381aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V185 Q3EAA5	-	-
UBQ10-204	AT4G05320.5	1204	305aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A384KF74 J7FN14 Q3E7T8	-	-
UBQ10-206	AT4G05320.8	1147	305aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A384KF74 J7FN14 Q3E7T8	-	-
UBQ10-205	AT4G05320.7	923	153aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JGM3	-	-

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	1	76	-	cd01803	-
Gene3D	1	76	-	3.10.20.90	-
CDD	77	152	-	cd01803	-
Gene3D	77	153	-	3.10.20.90	-
PANTHER	77	152	Ubiquitin and ubiquitin-like	PTHR10666	IPR050158 [Display all genes with this domain]
PROSITE patterns	27	52	Ubiquitin conserved site	PS00299	IPR019954 [Display all genes with this domain]
PROSITE patterns	103	128	Ubiquitin conserved site	PS00299	IPR019954 [Display all genes with this domain]
Prints	11	31	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
Prints	32	52	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
Prints	53	74	Ubiquitin domain	PR00348	IPR019956 [Display all genes with this domain]
SMART	1	72	Ubiquitin-like domain	SM00213	IPR000626 [Display all genes with this domain]
PROSITE profiles	1	76	Ubiquitin-like domain	PS50053	IPR000626 [Display all genes with this domain]
Pfam	3	74	Ubiquitin-like domain	PF00240	IPR000626 [Display all genes with this domain]
SMART	77	148	Ubiquitin-like domain	SM00213	IPR000626 [Display all genes with this domain]
PROSITE profiles	77	152	Ubiquitin-like domain	PS50053	IPR000626 [Display all genes with this domain]
Pfam	79	150	Ubiquitin-like domain	PF00240	IPR000626 [Display all genes with this domain]
Superfamily	1	76	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]
Superfamily	75	152	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]

Other features

Show entries

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153
Alphafold	1	153

.

Personal Data