Transcript: AT3G58720.3 (AT3G58720-201) - Domains & features - Arabidopsis_thaliana

Description

RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825041]

Location

About this transcript

This transcript has 4 exons, is annotated with 17 domains and features, is associated with 97 variant alleles and maps to 20 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT3G58720-201	AT3G58720.3	1014	317aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LN13	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT3G58720-202	AT3G58720.2	944	266aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A384LKN3 F4J5Z1	-	-
AT3G58720-204	AT3G58720.4	833	258aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LN14	-	-
AT3G58720-203	AT3G58720.1	717	238aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9LXS9	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	102	219	-	PTHR45977	-
Superfamily	166	220	-	SSF57850	-
CDD	170	216	-	cd23118	-
Pfam	171	213	Zinc finger, RING-type	PF13639	IPR001841 [Display all genes with this domain]
SMART	172	212	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	172	213	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	156	230	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Transcript: AT3G58720.3 AT3G58720-201