Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT3G08020.1 AT3G08020-201

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Description

PHD finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:819993]

Location

Chromosome 3: 2,557,437-2,561,848 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 236 variant alleles and maps to 37 oligo probes.

Gene

This transcript is a product of gene AT3G08020 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT3G08020-201	AT3G08020.1	2970	779aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0WKW1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	148	201	-	cd16448	-
PANTHER	1	752	MYST family histone acetyltransferases	PTHR10615	IPR050603 [Display all genes with this domain]
Superfamily	137	201	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
Superfamily	192	253	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
Superfamily	283	341	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	145	203	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	203	246	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
PROSITE profiles	283	342	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
SMART	147	201	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
SMART	202	248	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
SMART	285	340	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	148	200	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
PROSITE profiles	148	201	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	142	257	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	280	342	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	415	447
MobiDBLite	514	533
MobiDBLite	552	566
MobiDBLite	552	704
MobiDBLite	589	625
MobiDBLite	645	662
MobiDBLite	674	704
Seg	422	437
Seg	550	563
Alphafold	1	779

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