Transcript: AT3G05870.4 (APC11-202) - Domains & features - Arabidopsis_thaliana

Description

anaphase-promoting complex/cyclosome 11 [Source:NCBI gene (formerly Entrezgene);Acc:819756]

Location

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 210 variant alleles and maps to 21 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
APC11-204	AT3G05870.5	1455	90aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VHK0 A0A384LJP7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
APC11-202	AT3G05870.4	1411	90aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VHK0 A0A384LJP7	-	-
APC11-201	AT3G05870.3	1142	90aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VHK0 A0A384LJP7	-	-
APC11-203	AT3G05870.2	692	87aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LLE4	-	-
APC11-206	AT3G05870.1	592	87aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LLE4	-	-
APC11-205	AT3G05870.6	581	87aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LLE4	-	-
APC11-207	AT3G05870.7	237	78aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LLE8	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	12	89	-	SSF57850	-
CDD	26	88	Anaphase-promoting complex subunit 11, RING-H2 finger	cd16456	IPR024991 [Display all genes with this domain]
Pfam	26	90	Anaphase-promoting complex subunit 11, RING-H2 finger	PF12861	IPR024991 [Display all genes with this domain]
PANTHER	11	89	RING-box E3 Ubiquitin Ligase	PTHR11210	IPR051031 [Display all genes with this domain]
PROSITE profiles	40	83	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	7	90	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Transcript: AT3G05870.4 APC11-202