Arabidopsis thaliana (TAIR10)
Description

WD40 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819354]

Location
About this transcript

This transcript has 25 exons, is annotated with 47 domains and features, is associated with 409 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene AT2G47410 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT2G47410-205AT2G47410.552891530aa
 
Protein coding
A0A178W3E8 A0A384KA14 -Ensembl Canonical
AT2G47410-203AT2G47410.357031348aa
 
Protein coding
A0A1P8AZS1 A0A384L4J4 --
AT2G47410-202AT2G47410.456731338aa
 
Protein coding
A0A1P8AZR4 --
AT2G47410-201AT2G47410.254151519aa
 
Protein coding
A0A5S9X7R9 F4IL44 --
AT2G47410-204AT2G47410.152591520aa
 
Protein coding
F4IL43 --
AT2G47410-206AT2G47410.647511348aa
 
Protein coding
A0A1P8AZS1 A0A384L4J4 --

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
CDD228599-cd00200-
PROSITE profiles232267-PS50294-
PROSITE profiles274307-PS50294-
PROSITE profiles316351-PS50294-
CDD13901519-cd05529-
SMART14131520BromodomainSM00297IPR001487 [Display all genes with this domain]
Pfam14451495BromodomainPF00439IPR001487 [Display all genes with this domain]
PANTHER321505Bromodomain and WD repeat-containingPTHR16266IPR052060 [Display all genes with this domain]
Gene3D14131519Bromodomain-like superfamily1.20.920.10IPR036427 [Display all genes with this domain]
Superfamily14151518Bromodomain-like superfamilySSF47370IPR036427 [Display all genes with this domain]
SMART225264WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam228264WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles232273WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART267306WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam270305WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles274315WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART309351WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam311351WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles316351WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART368408WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE profiles376408WD40 repeatPS50082IPR001680 [Display all genes with this domain]
Pfam380408WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART420485WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART517556WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART559599WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam560599WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE patterns586600WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily223643WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D203368WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
Gene3D369452WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
Gene3D462657WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite770932
MobiDBLite788798
MobiDBLite815824
MobiDBLite850867
MobiDBLite884894
MobiDBLite11821202
MobiDBLite11861202
Seg284298
Seg507526
Seg788805
Seg884911
Seg10621074
Seg10881099
Seg11381150
Seg11861204
Seg15041520