Transcript: AT2G42160.2 (BRIZ1-202) - Domains & features - Arabidopsis_thaliana

Description

zinc finger (ubiquitin-hydrolase) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818816]

Location

About this transcript

This transcript has 10 exons, is annotated with 14 domains and features, is associated with 172 variant alleles and maps to 36 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
BRIZ1-201	AT2G42160.1	1767	488aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E5KGE0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
BRIZ1-202	AT2G42160.2	1448	449aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AYK4	-	-
BRIZ1-203	AT2G42160.3	1310	403aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AYR4	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	26	438	-	PTHR24007	-
CDD	72	153	-	cd12437	-
Superfamily	191	289	-	SSF57850	-
Pfam	64	160	BRCA1-associated 2/ETP1, RRM	PF07576	IPR011422 [Display all genes with this domain]
CDD	172	214	BRCA1-associated protein, RING finger, H2 subclass	cd16457	IPR047243 [Display all genes with this domain]
PROSITE profiles	174	214	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	190	303	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
PROSITE profiles	208	301	Zinc finger, UBP-type	PS50271	IPR001607 [Display all genes with this domain]
SMART	224	273	Zinc finger, UBP-type	SM00290	IPR001607 [Display all genes with this domain]
Pfam	225	285	Zinc finger, UBP-type	PF02148	IPR001607 [Display all genes with this domain]

Transcript: AT2G42160.2 BRIZ1-202