Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: AT2G37160.1 AT2G37160-201

.

Description

Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818292]

Location

Chromosome 2: 15,608,697-15,612,934 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 23 domains and features, is associated with 249 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene AT2G37160 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT2G37160-204	AT2G37160.2	2346	573aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4IQ10	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT2G37160-203	AT2G37160.4	2681	457aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B079	-	-
AT2G37160-201	AT2G37160.1	2390	544aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VX86 F4IQ11	-	-
AT2G37160-202	AT2G37160.3	2359	407aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B082	-	-

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	341	375	-	PS50294	-
PANTHER	13	531	WD repeat creC family regulators	PTHR14107	IPR051362 [Display all genes with this domain]
SMART	217	263	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	292	331	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	303	331	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	306	340	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	334	373	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE profiles	341	382	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
Pfam	347	373	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	376	428	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	477	514	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	170	514	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	17	522	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	1	26
MobiDBLite	1	30
MobiDBLite	69	88
MobiDBLite	75	88
MobiDBLite	514	544
MobiDBLite	516	544
Seg	5	26
Seg	72	106
Seg	109	122
Seg	126	142

.

Personal Data