Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: AT1G77250.1 AT1G77250-201

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Description

RING/FYVE/PHD-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:844061]

Location

Chromosome 1: 29,020,176-29,023,474 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 25 domains and features, is associated with 283 variant alleles and maps to 40 oligo probes.

Gene

This transcript is a product of gene AT1G77250 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT1G77250-201	AT1G77250.1	2038	522aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1JPM3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	171	291	-	2.30.30.1150	-
PANTHER	242	326	-	PTHR47162	-
Superfamily	229	289	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
Superfamily	343	404	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
Superfamily	405	454	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	240	290	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	243	287	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
PROSITE profiles	352	406	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
PROSITE profiles	402	452	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	405	449	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	242	288	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
SMART	354	404	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
SMART	407	450	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	400	449	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	292	404	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	405	452	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	19
MobiDBLite	1	56
MobiDBLite	97	122
MobiDBLite	315	328
MobiDBLite	315	337
MobiDBLite	470	496
Seg	104	116
Seg	326	340
Ncoils	453	473

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