Transcript: AT1G55250.3 (HUB2-202) - Domains & features - Arabidopsis_thaliana

Description

histone mono-ubiquitination 2 [Source:NCBI gene (formerly Entrezgene);Acc:841968]

Location

About this transcript

This transcript has 20 exons, is annotated with 23 domains and features, is associated with 293 variant alleles and maps to 53 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
HUB2-203	AT1G55250.1	2779	900aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9C895	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
HUB2-201	AT1G55250.5	3254	881aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8APW2 A0A654EUD4	-	-
HUB2-202	AT1G55250.3	2992	899aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4I079	-	-
HUB2-204	AT1G55250.4	1793	397aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4I080	-	-
HUB2-205	AT1G55250.2	1275	383aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WHT6	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	687	813	-	1.20.5.340	-
CDD	825	897	-	cd16499	-
Superfamily	832	891	-	SSF57850	-
PANTHER	1	899	E3 ubiquitin ligase Bre1	PTHR23163	IPR013956 [Display all genes with this domain]
Pfam	833	885	Zinc finger, C3HC4 RING-type	PF00097	IPR018957 [Display all genes with this domain]
PROSITE profiles	833	885	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
SMART	833	885	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE patterns	862	871	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	815	898	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Transcript: AT1G55250.3 HUB2-202