Transcript: AT1G54390.6 (ING2-207) - Domains & features - Arabidopsis_thaliana

Description

PHD finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841881]

Location

About this transcript

This transcript has 8 exons, is annotated with 11 domains and features, is associated with 199 variant alleles and maps to 39 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
ING2-208	AT1G54390.2	1318	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HWW1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ING2-205	AT1G54390.7	1519	242aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HWW5	-	-
ING2-202	AT1G54390.3	1502	262aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WC19 B3H615	-	-
ING2-204	AT1G54390.1	1434	306aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
ING2-203	AT1G54390.5	1419	242aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HWW5	-	-
ING2-201	AT1G54390.4	1389	262aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WC19 B3H615	-	-
ING2-206	AT1G54390.8	1211	242aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4HWW5	-	-
ING2-207	AT1G54390.6	1190	181aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8LE83	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	1	42	-	6.10.140.1740	-
CDD	127	174	-	cd15505	-
PANTHER	2	54	ING family	PTHR10333	IPR028651 [Display all genes with this domain]
Pfam	4	44	Inhibitor of growth protein, N-terminal histone-binding	PF12998	IPR024610 [Display all genes with this domain]
Superfamily	108	176	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	125	177	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	128	174	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	127	175	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
Gene3D	119	176	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Feature type	Start	End
Seg	55	66
Seg	87	98

Transcript: AT1G54390.6 ING2-207