Transcript: AT1G50440.5 (AT1G50440-203) - Domains & features - Arabidopsis_thaliana

Description

RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841466]

Location

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 129 variant alleles and maps to 34 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT1G50440-204	AT1G50440.2	1333	250aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WLW2 Q9LPR9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT1G50440-202	AT1G50440.1	1250	250aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WLW2 Q9LPR9	-	-
AT1G50440-205	AT1G50440.3	1165	250aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178WLW2 Q9LPR9	-	-
AT1G50440-203	AT1G50440.5	1021	233aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AS58	-	-
AT1G50440-201	AT1G50440.4	905	222aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AS62	-	-

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	22	195	-	PTHR46347	-
Superfamily	60	115	-	SSF57850	-
CDD	64	112	-	cd16495	-
PROSITE profiles	56	118	Zinc finger, RING-CH-type	PS51292	IPR011016 [Display all genes with this domain]
SMART	63	112	Zinc finger, RING-CH-type	SM00744	IPR011016 [Display all genes with this domain]
Pfam	64	111	Zinc finger, RING-CH-type	PF12906	IPR011016 [Display all genes with this domain]
Gene3D	49	124	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Transcript: AT1G50440.5 AT1G50440-203