Arabidopsis thaliana (TAIR10)
Description

Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837599]

Location
About this transcript

This transcript has 2 exons, is annotated with 38 domains and features, is associated with 182 variant alleles and maps to 38 oligo probes.

Gene

This transcript is a product of gene AT1G10580 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT1G10580-201AT1G10580.12193573aa
 
Protein coding
A4FVN8 -Ensembl Canonical

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
CDD274573-cd00200-
PROSITE profiles278312-PS50294-
PROSITE profiles322359-PS50294-
PROSITE profiles408440-PS50294-
PROSITE profiles540573-PS50294-
Prints298312G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
Prints341355G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
Prints427441G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
PANTHER1573Pre-mRNA-processing factor 17PTHR43979IPR032847 [Display all genes with this domain]
SMART271311WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam273311WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles278312WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART315354WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam316354WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles322363WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART357398WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART401440WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam403439WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles408440WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART444483WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam460482WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART489530WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam494530WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART533573WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam536573WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles540573WD40 repeatPS50082IPR001680 [Display all genes with this domain]
PROSITE patterns298312WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily269573WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D255573WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite133
MobiDBLite1423
MobiDBLite151251
MobiDBLite160173
MobiDBLite197250
Seg823
Seg152184
Seg219233
Ncoils151171