Arabidopsis thaliana (TAIR10)
Description

global transcription factor group E4 [Source:NCBI gene (formerly Entrezgene);Acc:837133]

Location
About this transcript

This transcript has 6 exons, is annotated with 30 domains and features, is associated with 245 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene AT1G06230 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
GTE4-203AT1G06230.23602766aa
 
Protein coding
A0A178WDM0 Q9LNC4 -Ensembl Canonical
GTE4-202AT1G06230.33523766aa
 
Protein coding
A0A178WDM0 Q9LNC4 --
GTE4-204AT1G06230.13316766aa
 
Protein coding
A0A178WDM0 Q9LNC4 --
GTE4-201AT1G06230.43217766aa
 
Protein coding
A0A178WDM0 Q9LNC4 --

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
PANTHER258763-PTHR45926-
SMART415524BromodomainSM00297IPR001487 [Display all genes with this domain]
Pfam425508BromodomainPF00439IPR001487 [Display all genes with this domain]
PROSITE profiles433505BromodomainPS50014IPR001487 [Display all genes with this domain]
Prints436449BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints452468BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints468486BromodomainPR00503IPR001487 [Display all genes with this domain]
Prints486505BromodomainPR00503IPR001487 [Display all genes with this domain]
Gene3D395532Bromodomain-like superfamily1.20.920.10IPR036427 [Display all genes with this domain]
Superfamily420527Bromodomain-like superfamilySSF47370IPR036427 [Display all genes with this domain]
PROSITE profiles597678NET domainPS51525IPR027353 [Display all genes with this domain]
Pfam607668NET domainPF17035IPR027353 [Display all genes with this domain]
Gene3D599681NET domain superfamily1.20.1270.220IPR038336 [Display all genes with this domain]
CDD421519Putative transcription factor GTE, bromodomaincd05506IPR037377 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite87108
MobiDBLite234262
MobiDBLite238250
MobiDBLite388412
MobiDBLite544606
MobiDBLite574589
MobiDBLite687766
MobiDBLite736766
Seg5059
Seg318329
Seg396406
Seg574589
Seg645658
Seg736764
Ncoils284304
Ncoils674694