Transcript: AT1G05120.2 (AT1G05120-202) - Domains & features - Arabidopsis_thaliana

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT1G05120-202	AT1G05120.2	2989	876aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AWF9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT1G05120-201	AT1G05120.1	2886	833aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W5J4 F4I795	-	-

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	182	525	-	cd18008	-
Superfamily	612	666	-	SSF57850	-
CDD	620	665	-	cd16567	-
SMART	178	473	Helicase superfamily 1/2, ATP-binding domain	SM00487	IPR014001 [Display all genes with this domain]
PROSITE profiles	194	452	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
PROSITE profiles	702	866	Helicase, C-terminal domain-like	PS51194	IPR001650 [Display all genes with this domain]
Pfam	706	820	Helicase, C-terminal domain-like	PF00271	IPR001650 [Display all genes with this domain]
SMART	737	820	Helicase, C-terminal domain-like	SM00490	IPR001650 [Display all genes with this domain]
Superfamily	143	525	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Superfamily	396	875	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	540	876	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Pfam	185	599	SNF2, N-terminal	PF00176	IPR000330 [Display all genes with this domain]
Gene3D	151	312	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]
Gene3D	322	539	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]
CDD	704	831	SNF2/RAD5-like, C-terminal helicase domain	cd18793	IPR049730 [Display all genes with this domain]
PANTHER	86	875	SNF2/RAD54 Helicase and Transcription Factor	PTHR45626	IPR050628 [Display all genes with this domain]
Pfam	622	661	Zinc finger, C3HC4 RING-type	PF00097	IPR018957 [Display all genes with this domain]
SMART	622	661	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	622	662	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	637	646	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	619	673	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	60	94
MobiDBLite	339	385
MobiDBLite	356	365
MobiDBLite	375	385
Seg	92	100
Seg	120	135
Seg	338	354
Seg	364	374

Transcript: AT1G05120.2 AT1G05120-202

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Transcript: AT1G05120.2 AT1G05120-202

Domains & features

Domains

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About Us

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