Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT5G12440

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Description

CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831119]

Location

Chromosome 5: 4,035,181-4,042,254 reverse strand.

About this gene

This gene has 12 transcripts (splice variants), 260 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
AT5G12440-204	AT5G12440.3	3031	681aa	AT5G12440.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFW7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT5G12440-212	AT5G12440.4	3316	650aa	AT5G12440.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-207	AT5G12440.2	3060	650aa	AT5G12440.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-208	AT5G12440.5	3001	681aa	AT5G12440.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFW7	-	-
AT5G12440-211	AT5G12440.6	2990	681aa	AT5G12440.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFW7	-	-
AT5G12440-209	AT5G12440.7	2955	650aa	AT5G12440.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-210	AT5G12440.8	2929	681aa	AT5G12440.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFW7	-	-
AT5G12440-203	AT5G12440.9	2901	650aa	AT5G12440.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-206	AT5G12440.10	2874	681aa	AT5G12440.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFW7	-	-
AT5G12440-201	AT5G12440.1	2823	650aa	AT5G12440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-205	AT5G12440.11	2685	650aa	AT5G12440.11	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-
AT5G12440-202	AT5G12440.12	2524	650aa	AT5G12440.12	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S9Y460 Q94CJ8	-	-

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Summary

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