Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: LCL1 AT5G02840

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Description

LHY/CCA1-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:831766]

Gene Synonyms

F9G14.150, F9G14_150, LHY/CCA1-like 1, REVEILLE 4, RVE4

Location

Chromosome 5: 648,648-651,979 forward strand.

About this gene

This gene has 5 transcripts (splice variants), 101 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
LCL1-202	AT5G02840.1	1476	293aa	AT5G02840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178U8Z5 Q6R0G4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
LCL1-205	AT5G02840.4	1632	265aa	AT5G02840.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFY6	-	-
LCL1-201	AT5G02840.3	1454	283aa	AT5G02840.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7G2F4L8	-	-
LCL1-204	AT5G02840.2	1386	293aa	AT5G02840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178U8Z5 Q6R0G4	-	-
LCL1-203	AT5G02840.5	1029	288aa	AT5G02840.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8BFZ8	-	-

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Summary

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