Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT1G09890

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Description

Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521]

Gene Synonyms

F21M12.28, F21M12_28

Location

Chromosome 1: 3,214,049-3,217,603 reverse strand.

About this gene

This gene has 5 transcripts (splice variants), 142 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
AT1G09890-201	AT1G09890.3	2224	657aa	AT1G09890.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AQ71	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT1G09890-203	AT1G09890.2	2311	546aa	AT1G09890.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AQ50	-	-
AT1G09890-202	AT1G09890.4	2152	633aa	AT1G09890.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AQ77 A0A5S9TK04	-	-
AT1G09890-204	AT1G09890.5	2090	628aa	AT1G09890.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AQ61	-	-
AT1G09890-205	AT1G09890.1	1899	617aa	AT1G09890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4I2M6	-	-

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Summary

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