Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Gene: AT1G09880

.

Description

Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837520]

Gene Synonyms

F21M12.27, F21M12_27

Location

Chromosome 1: 3,208,712-3,213,468 reverse strand.

About this gene

This gene has 4 transcripts (splice variants), 144 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
AT1G09880-202	AT1G09880.3	2226	711aa	AT1G09880.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AV46	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT1G09880-201	AT1G09880.2	2319	697aa	AT1G09880.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AV80 A0A5S9TJM1	-	-
AT1G09880-204	AT1G09880.4	2011	665aa	AT1G09880.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AV55	-	-
AT1G09880-203	AT1G09880.1	1925	631aa	AT1G09880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O04510	-	-

.

Summary

.

.