Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT3G59950

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Description

Peptidase family C54 protein [Source:NCBI gene (formerly Entrezgene);Acc:825165]

Location

Chromosome 3: 22,144,280-22,147,712 reverse strand.

About this gene

This gene has 5 transcripts (splice variants), 179 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT3G59950-202	AT3G59950.1	1905	477aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VJJ3 Q9M1Y0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT3G59950-201	AT3G59950.2	2228	360aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4J9I3	-	-
AT3G59950-203	AT3G59950.4	1623	391aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LMQ9	-	-
AT3G59950-204	AT3G59950.5	1486	393aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1I9LMQ8	-	-
AT3G59950-205	AT3G59950.3	1265	267aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Literature

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Showing the top 10 hits from Europe PubMed Central

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PubMed ID	Title	Authors	Journal
32326055	Transcriptional Plasticity of Autophagy-Related Genes Correlates with the Genetic Response to Nitrate Starvation in Arabidopsis Thaliana.	Bedu M, Marmagne A, Masclaux-Daubresse C, Chardon F.	Cells 9 (4) 2020
39757240	ATG8 delipidation is not universally critical for autophagy in plants.	Zou Y, Ohlsson JA, Holla S, Sabljić I, Leong JX, Ballhaus F, Krebs M, Schumacher K, Moschou PN, Stael S, Üstün S, Dagdas Y, Bozhkov PV, Minina EA.	Nat Commun 16 (1) 2025
34829975	Research Progress of ATGs Involved in Plant Immunity and NPR1 Metabolism.	Huang S, Zhang B, Chen W.	Int J Mol Sci 22 (22) 2021
36979491	Genome-Wide Identification and Expression Analysis of Rosa roxburghii Autophagy-Related Genes in Response to Top-Rot Disease.	Luo K, Li J, Lu M, An H, Wu X.	Biomolecules 13 (3) 2023
36232619	Genome-Wide Identification and Functional Characterization Reveals the Pivotal Roles of BnaA8.ATG8F in Salt Stress Tolerance and Nitrogen Limitation Adaptation in Allotetraploid Rapeseed.	Zhang T, Zhou T, Zhang Y, Chen J, Song H, Wu P, Yue C, Huang J, Zhang Z, Hua Y.	Int J Mol Sci 23 (19) 2022
34961093	Exploration of Autophagy Families in Legumes and Dissection of the ATG18 Family with a Special Focus on Phaseolus vulgaris.	Quezada-Rodríguez EH, Gómez-Velasco H, Arthikala MK, Lara M, Hernández-López A, Nanjareddy K.	Plants (Basel) 10 (12) 2021
32295035	Comprehensive Analysis of Autophagy-Related Genes in Sweet Orange (Citrus sinensis) Highlights Their Roles in Response to Abiotic Stresses.	Fu XZ, Zhou X, Xu YY, Hui QL, Chun CP, Ling LL, Peng LZ.	Int J Mol Sci 21 (8) 2020
31952322	Genomic Characterization and Expressional Profiles of Autophagy-Related Genes (ATGs) in Oilseed Crop Castor Bean (Ricinus communis L.).	Han B, Xu H, Feng Y, Xu W, Cui Q, Liu A.	Int J Mol Sci 21 (2) 2020
22058033	Role of plant autophagy in stress response.	Han S, Yu B, Wang Y, Liu Y.	Protein Cell 2 (10) 2011
15960803	Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation.	Jen CH, Michalopoulos I, Westhead DR, Meyer P.	Genome Biol 6 (6) 2005

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