Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Gene: AT3G52500

.

Description

Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:824415]

Location

Chromosome 3: 19,465,264-19,467,455 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 174 orthologues and 68 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT3G52500-201	AT3G52500.1	2192	469aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9SVD1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Literature

.

Showing the top 9 hits from Europe PubMed Central

Filter

PubMed ID	Title	Authors	Journal
33036444	An integrative Study Showing the Adaptation to Sub-Optimal Growth Conditions of Natural Populations of Arabidopsis thaliana: A Focus on Cell Wall Changes.	Duruflé H, Ranocha P, Balliau T, Zivy M, Albenne C, Burlat V, Déjean S, Jamet E, Dun, C.	Cells 9 (10) 2020
36818878	Phylogenetic and AlphaFold predicted structure analyses provide insights for A1 aspartic protease family classification in Arabidopsis.	Duan Y, Tang H, Yu X.	Front Plant Sci 14 2023
18796151	A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers.	Irshad M, Canut H, Borderies G, Pont-Lezica R, Jamet E.	BMC Plant Biol 8 2008
17526915	A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases.	Minic Z, Jamet E, Négroni L, Arsene der Garabedian P, Zivy M, Jouanin L.	J Exp Bot 58 (10) 2007
28848580	Nitrate Uptake Affects Cell Wall Synthesis and Modeling.	Landi S, Esposito S.	Front Plant Sci 8 2017
29281085	Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?	Havé M, Balliau T, Cottyn-Boitte B, Dérond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C.	J Exp Bot 69 (6) 2018
17164336	RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins.	Moissiard G, Voinnet O.	Proc Natl Acad Sci U S A 103 (51) 2006
23945092	Genome-wide identification, evolutionary and expression analysis of the aspartic protease gene superfamily in grape.	Guo R, Xu X, Carole B, Li X, Gao M, Zheng Y, Wang X.	BMC Genomics 14 2013
20016750	Application of One Sided t-tests and a Generalized Experiment Wise Error Rate to High-Density Oligonucleotide Microarray Experiments: An Example Using Arabidopsis.	Muir WM, Romero-Severson J, Rider SD, Simons A, Ogas J.	J Data Sci 4 (3) 2006

.

Personal Data