Arabidopsis thaliana (TAIR10)
Description

uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:825366]

Location
About this gene

This gene has 1 transcript (splice variant) and 18 orthologues.

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT3G61930-201AT3G61930.1744109aa
 
Protein coding
A0A384KZU4 Q9M272 -Ensembl Canonical

Summary of orthologues of this gene Hide

Click on 'Show details' to display the orthologues for one or more groups of species. Alternatively, click on 'Configure this page' to choose a custom list of species.

Species setShow detailsWith 1:1 orthologuesWith 1:many orthologuesWith many:many orthologuesWithout orthologues
All (116 species)
630107
Amborellales (1 species)
0001
Chlorophyta (2 species)
0002
Embryophyta (5 species)
0005
Liliopsida (40 species)
00040
Rhodophyta (3 species)
0003
Streptophyta (1 species)
0001
Eudicotyledons (64 species)
63055

Selected orthologues Hide

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  • Species
  • Type
  • Orthologue
  • Target %id
  • Query %id
  • GOC Score
  • WGA Coverage
  • High Confidence
SpeciesTypeOrthologueTarget %idQuery %idGOC ScoreWGA CoverageHigh Confidence
Arabidopsis halleri1-to-1

View Gene Tree

g05404

Compare Regions (FJVB01000009.1:1,180,567-1,180,999:-1)

View Sequence Alignments

90.83 %90.83 %100100.00Yes
Arabidopsis lyrata1-to-1

View Gene Tree

fgenesh2_kg.5__2690__AT3G61930.1

Compare Regions (5:20,576,683-20,577,355:1)

View Sequence Alignments

90.83 %90.83 %100100.00Yes
Arabis alpina1-to-1

View Gene Tree

AALP_AA5G277700

Compare Regions (5:21,982,630-21,983,224:1)

View Sequence Alignments

64.91 %67.89 %100100.00Yes
Brassica juncea1-to-many

View Gene Tree

BjuA04g00720S

Compare Regions (A04:585,793-586,330:-1)

View Sequence Alignments

66.06 %66.06 %00.00No
Brassica juncea1-to-many

View Gene Tree

BjuA09g13710S

Compare Regions (A09:7,503,830-7,504,405:-1)

View Sequence Alignments

62.73 %63.30 %100100.00Yes
Brassica juncea1-to-many

View Gene Tree

BjuB06g06060S

Compare Regions (B06:4,576,015-4,576,344:1)

View Sequence Alignments

65.14 %65.14 %25100.00Yes
Brassica juncea1-to-many

View Gene Tree

BjuB08g00140S

Compare Regions (B08:136,478-137,031:1)

View Sequence Alignments

66.36 %66.97 %50100.00Yes
Brassica napus1-to-many

View Gene Tree

BnaCnng29530D  (GSBRNA2T00017522001)

Compare Regions (LK033440:2,524-2,853:1)

View Sequence Alignments

66.97 %66.97 %25100.00Yes
Brassica napus1-to-many

View Gene Tree

BnaC08g49030D  (GSBRNA2T00036026001)

Compare Regions (LK034108:27,366-27,698:1)

View Sequence Alignments

64.55 %65.14 %25100.00Yes
Brassica napus1-to-many

View Gene Tree

BnaA09g39500D  (GSBRNA2T00049443001)

Compare Regions (LK032011:169,827-170,159:1)

View Sequence Alignments

62.73 %63.30 %100100.00Yes
Brassica napus1-to-many

View Gene Tree

BnaA04g00480D  (GSBRNA2T00149284001)

Compare Regions (LK031857:1,292,377-1,292,706:1)

View Sequence Alignments

66.06 %66.06 %0100.00Yes
Brassica oleracea1-to-many

View Gene Tree

Bo07217s010

Compare Regions (Scaffold07217:361-690:-1)

View Sequence Alignments

66.97 %66.97 %0100.00Yes
Brassica oleracea1-to-many

View Gene Tree

Bo8g097460

Compare Regions (C8:33,231,640-33,231,972:1)

View Sequence Alignments

64.55 %65.14 %100100.00Yes
Brassica rapa R-o-181-to-1

View Gene Tree

A04p001000.1_BraROA

Compare Regions (A04:489,107-489,436:-1)

View Sequence Alignments

65.14 %65.14 %1000.00Yes
Camelina sativa1-to-1

View Gene Tree

Csa05g094140

Compare Regions (5:34,102,927-34,103,482:1)

View Sequence Alignments

85.32 %85.32 %100100.00Yes
Camelina sativa1-to-1

View Gene Tree

Csa07g002670

Compare Regions (7:819,007-819,602:-1)

View Sequence Alignments

83.49 %83.49 %100100.00Yes
Camelina sativa1-to-1

View Gene Tree

Csa16g002730

Compare Regions (16:868,762-869,467:-1)

View Sequence Alignments

84.40 %84.40 %10099.65Yes
Eutrema salsugineum1-to-1

View Gene Tree

EUTSA_v10006380mg

Compare Regions (KI517455:521,003-521,326:-1)

View Sequence Alignments

66.36 %65.14 %100100.00Yes

Species without orthologues

107 species are not shown in the table above because they don't have any orthologue with AT3G61930.

  • Actinidia chinensis
  • Aegilops tauschii
  • Aegilops umbellulata
  • Amborella trichopoda
  • Ananas comosus
  • Arachis hypogaea
  • Asparagus officinalis
  • Avena sativa OT3098
  • Avena sativa Sang
  • Beta vulgaris
  • Brachypodium distachyon
  • Cajanus cajan (pigeon pea) - GCA_000340665.1
  • Cannabis sativa female
  • Capsicum annuum
  • Chara braunii
  • Chenopodium quinoa
  • Chlamydomonas reinhardtii
  • Chondrus crispus
  • Citrullus lanatus
  • Citrus clementina
  • Coffea canephora
  • Corchorus capsularis
  • Corylus avellana
  • Corymbia citriodora
  • Cucumis melo
  • Cucumis sativus
  • Cyanidioschyzon merolae
  • Cynara cardunculus
  • Daucus carota
  • Digitaria exilis
  • Dioscorea rotundata
  • Echinochloa crus-galli
  • Eragrostis curvula
  • Eragrostis tef
  • Eucalyptus grandis
  • Ficus carica
  • Fraxinus excelsior
  • Galdieria sulphuraria
  • Glycine max
  • Glycine soja (Wild soybean)
  • Gossypium raimondii
  • Helianthus annuus
  • Hordeum vulgare
  • Ipomoea triloba
  • Juglans regia
  • Kalanchoe fedtschenkoi
  • Lactuca sativa
  • Lathyrus sativus
  • Leersia perrieri
  • Lolium perenne
  • Lupinus angustifolius
  • Malus domestica Golden
  • Manihot esculenta
  • Marchantia polymorpha
  • Medicago truncatula
  • Musa acuminata
  • Nicotiana attenuata
  • Nymphaea colorata
  • Olea europaea
  • Oryza barthii
  • Oryza brachyantha
  • Oryza glaberrima
  • Oryza glumipatula
  • Oryza sativa Indica Group
  • Oryza longistaminata
  • Oryza meridionalis
  • Oryza nivara
  • Oryza punctata
  • Oryza rufipogon
  • Oryza sativa Japonica Group
  • Ostreococcus lucimarinus
  • Panicum hallii HAL2
  • Papaver somniferum
  • Phaseolus vulgaris
  • Physcomitrium patens
  • Pistacia vera
  • Pisum sativum
  • Populus trichocarpa
  • Prunus avium
  • Prunus dulcis
  • Prunus persica
  • Quercus lobata
  • Quercus suber
  • Rosa chinensis
  • Saccharum spontaneum
  • Secale cereale
  • Selaginella moellendorffii
  • Sesamum indicum
  • Setaria italica
  • Setaria viridis
  • Solanum lycopersicum
  • Solanum tuberosum
  • Sorghum bicolor
  • Theobroma cacao Matina 1-6
  • Trifolium pratense
  • Triticum aestivum
  • Triticum dicoccoides
  • Triticum spelta
  • Triticum timopheevii
  • Triticum turgidum
  • Triticum urartu
  • Vicia faba
  • Vigna angularis
  • Vigna radiata
  • Vigna unguiculata
  • Vitis vinifera
  • Zea mays

Additionally, cultivars of 1 species are not shown in this table. Cultivar orthologues can be found on the gene pages of these reference species:

  • Brassica rapa R-o-18