Arabidopsis thaliana (TAIR10)
Description

Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837861]

Gene Synonyms

F3F19.6, F3F19_6

Location
About this gene

This gene has 2 transcripts (splice variants), 148 orthologues and 460 paralogues.

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT1G13040-202AT1G13040.22216517aa
 
Protein coding
A0A178WI25 Q9SAD9 -Ensembl Canonical
AT1G13040-201AT1G13040.11652517aa
 
Protein coding
A0A178WI25 Q9SAD9 --

Summary of orthologues of this gene Hide

Click on 'Show details' to display the orthologues for one or more groups of species. Alternatively, click on 'Configure this page' to choose a custom list of species.

Species setShow detailsWith 1:1 orthologuesWith 1:many orthologuesWith many:many orthologuesWithout orthologues
All (116 species)
7723016
Amborellales (1 species)
1000
Chlorophyta (2 species)
0002
Embryophyta (5 species)
0005
Liliopsida (40 species)
29803
Rhodophyta (3 species)
0003
Streptophyta (1 species)
0001
Eudicotyledons (64 species)
471502

Selected orthologues Hide

Show/hide columns
  • Species
  • Type
  • Orthologue
  • Target %id
  • Query %id
  • GOC Score
  • WGA Coverage
  • High Confidence
SpeciesTypeOrthologueTarget %idQuery %idGOC ScoreWGA CoverageHigh Confidence
Actinidia chinensis1-to-1

View Gene Tree

CEY00_Acc14231

Compare Regions (LG13:2,867,019-2,872,132:1)

View Sequence Alignments

22.65 %22.82 %n/a98.79No
Aegilops tauschii1-to-1

View Gene Tree

AET2Gv20192700

Compare Regions (2D:48,970,475-48,978,051:-1)

View Sequence Alignments

32.73 %41.78 %n/a81.59Yes
Aegilops umbellulata1-to-1

View Gene Tree

AeUmb.TA1851.r1.2UG0044540

Compare Regions (2U_TA1851:591,682,631-591,693,405:1)

View Sequence Alignments

32.58 %41.59 %n/an/aYes
Amborella trichopoda1-to-1

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AMTR_s00131p00098210

Compare Regions (AmTr_v1.0_scaffold00131:1,180,965-1,183,079:-1)

View Sequence Alignments

33.66 %45.84 %n/a85.51Yes
Ananas comosus1-to-1

View Gene Tree

Aco001746.1.path1

Compare Regions (contig19:8,262,371-8,265,827:1)

View Sequence Alignments

33.62 %45.07 %n/a83.71Yes
Arabidopsis halleri1-to-1

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g04768

Compare Regions (FJVB01000008.1:587,810-589,994:-1)

View Sequence Alignments

86.68 %96.91 %100100.00Yes
Arabidopsis lyrata1-to-1

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fgenesh2_kg.1__1411__AT1G13040.1

Compare Regions (1:5,401,916-5,403,469:1)

View Sequence Alignments

95.94 %95.94 %100100.00Yes
Arachis hypogaea1-to-many

View Gene Tree

arahy.Tifrunner.gnm2.ann2.Ah03g550300

Compare Regions (CM064398.1:137,530,312-137,537,947:-1)

View Sequence Alignments

55.05 %55.90 %n/an/aYes
Arachis hypogaea1-to-many

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arahy.Tifrunner.gnm2.ann2.Ah13g579500

Compare Regions (CM064408.1:139,758,228-139,763,523:-1)

View Sequence Alignments

55.62 %56.48 %n/an/aYes
Asparagus officinalis1-to-1

View Gene Tree

A4U43_C07F12790

Compare Regions (7:40,386,402-40,388,381:1)

View Sequence Alignments

37.33 %47.58 %n/an/aYes
Avena sativa OT30981-to-many

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AVESA.00001b.r3.4Cg0000324

Compare Regions (4C:25,839,672-25,844,119:-1)

View Sequence Alignments

27.58 %40.81 %n/an/aYes
Avena sativa OT30981-to-many

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AVESA.00001b.r3.5Dg0002990

Compare Regions (5D:452,329,509-452,333,707:1)

View Sequence Alignments

27.24 %41.78 %n/an/aYes
Avena sativa OT30981-to-many

View Gene Tree

AVESA.00001b.r3.6Ag0002893

Compare Regions (6A:409,958,478-409,964,784:1)

View Sequence Alignments

28.32 %41.20 %n/an/aYes
Avena sativa OT30981-to-many

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AVESA.00001b.r3.6Cg0002130

Compare Regions (6C:238,995,698-239,002,270:-1)

View Sequence Alignments

32.28 %9.86 %n/an/aNo
Avena sativa Sang1-to-many

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AVESA.00010b.r2.4CG1259520

Compare Regions (4C:33,692,742-33,699,763:-1)

View Sequence Alignments

32.88 %41.97 %n/an/aYes
Avena sativa Sang1-to-many

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AVESA.00010b.r2.5DG0944340

Compare Regions (5D:446,890,213-446,892,195:1)

View Sequence Alignments

32.73 %41.78 %n/an/aYes
Avena sativa Sang1-to-many

View Gene Tree

AVESA.00010b.r2.6AG1046280

Compare Regions (6A:320,672,951-320,673,574:-1)

View Sequence Alignments

38.65 %15.47 %n/an/aNo
Avena sativa Sang1-to-many

View Gene Tree

AVESA.00010b.r2.6AG1065000

Compare Regions (6A:406,226,136-406,231,251:1)

View Sequence Alignments

32.88 %41.97 %n/an/aYes
Avena sativa Sang1-to-many

View Gene Tree

AVESA.00010b.r2.6DG1153900

Compare Regions (6D:277,596,863-277,597,405:-1)

View Sequence Alignments

36.67 %12.77 %n/an/aNo
Beta vulgaris1-to-1

View Gene Tree

BVRB_7g157950

Compare Regions (7:1,953,346-1,965,711:1)

View Sequence Alignments

53.58 %53.58 %n/a95.88Yes
Brachypodium distachyon1-to-1

View Gene Tree

BRADI_1g17190v3

Compare Regions (1:13,791,066-13,795,304:1)

View Sequence Alignments

32.28 %41.39 %n/a81.43Yes
Brassica juncea1-to-many

View Gene Tree

BjuA06g34460S

Compare Regions (A06:31,216,644-31,218,723:1)

View Sequence Alignments

89.56 %89.56 %25100.00Yes
Brassica juncea1-to-many

View Gene Tree

BjuA08g27000S

Compare Regions (A08:23,150,387-23,152,099:-1)

View Sequence Alignments

87.23 %87.23 %250.00No
Brassica juncea1-to-many

View Gene Tree

BjuB03g54340S

Compare Regions (B03:58,977,004-58,978,563:-1)

View Sequence Alignments

88.63 %88.97 %75100.00Yes
Brassica juncea1-to-many

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BjuB04g30720S

Compare Regions (B04:42,110,469-42,112,818:-1)

View Sequence Alignments

89.56 %89.56 %504.06Yes
Brassica napus1-to-many

View Gene Tree

BnaC05g09130D  (GSBRNA2T00008952001)

Compare Regions (LK032095:600,998-602,599:-1)

View Sequence Alignments

88.78 %88.78 %50100.00Yes
Brassica napus1-to-many

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BnaA08g24460D  (GSBRNA2T00015253001)

Compare Regions (LK032115:577,492-579,045:1)

View Sequence Alignments

87.23 %87.23 %75100.00Yes
Brassica napus1-to-many

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BnaC03g56950D  (GSBRNA2T00057038001)

Compare Regions (LK032337:361,419-364,833:-1)

View Sequence Alignments

51.13 %87.23 %7584.84Yes
Brassica napus1-to-many

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BnaA06g07670D  (GSBRNA2T00105380001)

Compare Regions (LK031902:556,589-557,407:-1)

View Sequence Alignments

89.71 %47.20 %75100.00Yes
Brassica napus1-to-many

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BnaA06g07680D  (GSBRNA2T00105381001)

Compare Regions (LK031902:557,464-558,142:-1)

View Sequence Alignments

71.20 %26.31 %75100.00Yes
Brassica oleracea1-to-many

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Bo5g016370

Compare Regions (C5:5,143,198-5,144,751:-1)

View Sequence Alignments

88.97 %88.97 %25100.00Yes
Brassica oleracea1-to-many

View Gene Tree

Bo8g065140

Compare Regions (C8:20,503,572-20,506,986:1)

View Sequence Alignments

51.13 %87.23 %7584.84Yes
Brassica rapa R-o-181-to-many

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A06p009930.1_BraROA

Compare Regions (A06:3,557,236-3,558,789:-1)

View Sequence Alignments

89.56 %89.56 %1000.00Yes
Brassica rapa R-o-181-to-many

View Gene Tree

A08p041140.1_BraROA

Compare Regions (A08:23,285,295-23,286,746:-1)

View Sequence Alignments

87.37 %81.62 %75100.00Yes
Cajanus cajan
(pigeon pea) - GCA_000340665.1
1-to-1

View Gene Tree

C.cajan_23274

Compare Regions (5:2,006,568-2,008,121:1)

View Sequence Alignments

53.97 %53.97 %n/an/aYes
Camelina sativa1-to-1

View Gene Tree

Csa03g016850

Compare Regions (3:5,899,555-5,901,102:1)

View Sequence Alignments

92.23 %91.88 %100100.00Yes
Camelina sativa1-to-1

View Gene Tree

Csa14g016040

Compare Regions (14:6,196,882-6,198,816:1)

View Sequence Alignments

75.16 %93.62 %10087.34Yes
Camelina sativa1-to-1

View Gene Tree

Csa17g018340

Compare Regions (17:5,953,512-5,955,065:1)

View Sequence Alignments

93.42 %93.42 %100100.00Yes
Cannabis sativa female1-to-1

View Gene Tree

evm.TU.04.305

Compare Regions (4:5,397,352-5,398,899:1)

View Sequence Alignments

59.03 %58.80 %n/a99.65Yes
Capsicum annuum1-to-1

View Gene Tree

T459_15795

Compare Regions (6:3,415,895-3,417,727:1)

View Sequence Alignments

19.02 %22.44 %n/a92.23No
Chenopodium quinoa1-to-1

View Gene Tree

AUR62011787

Compare Regions (C_Quinoa_Scaffold_2008:1,118,145-1,119,698:1)

View Sequence Alignments

53.19 %53.19 %n/a95.88Yes
Citrullus lanatus1-to-1

View Gene Tree

Cla97C05G108140

Compare Regions (5:34,865,419-34,866,963:1)

View Sequence Alignments

57.00 %56.67 %n/a99.71Yes
Citrus clementina1-to-1

View Gene Tree

CICLE_v10031251mg

Compare Regions (KI536726:22,060,480-22,062,033:-1)

View Sequence Alignments

59.19 %59.19 %n/a99.40Yes
Corchorus capsularis1-to-1

View Gene Tree

CCACVL1_24274

Compare Regions (contig13747:52,324-53,883:-1)

View Sequence Alignments

57.61 %57.83 %n/a99.30Yes
Corylus avellana1-to-many

View Gene Tree

Cav04g23900

Compare Regions (ca4:34,507,949-34,510,323:1)

View Sequence Alignments

61.16 %60.93 %n/an/aYes
Corylus avellana1-to-many

View Gene Tree

Cav04g23910

Compare Regions (ca4:34,513,059-34,515,382:1)

View Sequence Alignments

61.16 %60.93 %n/an/aYes
Corymbia citriodora1-to-1

View Gene Tree

gene-BT93_H1201

Compare Regions (8:15,286,761-15,288,508:1)

View Sequence Alignments

56.48 %56.48 %n/a99.94Yes
Cucumis melo1-to-1

View Gene Tree

MELO3C034149.2

Compare Regions (contig11:3,777,455-3,782,003:1)

View Sequence Alignments

55.64 %55.32 %n/a99.71Yes
Cucumis sativus1-to-1

View Gene Tree

Csa_5G597500

Compare Regions (5:21,625,370-21,626,953:-1)

View Sequence Alignments

55.45 %55.13 %n/a99.71Yes
Cynara cardunculus1-to-1

View Gene Tree

Ccrd_015988

Compare Regions (scaffold_945:9,479-13,574:-1)

View Sequence Alignments

24.14 %24.37 %n/an/aNo
Daucus carota1-to-1

View Gene Tree

DCAR_031167

Compare Regions (9:33,195,679-33,204,150:1)

View Sequence Alignments

3.75 %6.96 %n/a68.25No
Digitaria exilis1-to-many

View Gene Tree

Dexi3A01G0002150

Compare Regions (3A:1,433,960-1,441,852:-1)

View Sequence Alignments

9.08 %17.02 %n/an/aNo
Digitaria exilis1-to-many

View Gene Tree

Dexi3B01G0002160

Compare Regions (3B:1,518,881-1,525,635:-1)

View Sequence Alignments

13.02 %28.05 %n/an/aNo
Digitaria exilis1-to-many

View Gene Tree

Dexi8A01G0002200

Compare Regions (8A:1,464,102-1,471,306:-1)

View Sequence Alignments

14.84 %33.46 %n/an/aNo
Digitaria exilis1-to-many

View Gene Tree

Dexi8B01G0002030

Compare Regions (8B:1,427,543-1,435,973:-1)

View Sequence Alignments

14.13 %33.27 %n/an/aNo
Echinochloa crus-galli1-to-many

View Gene Tree

scaffold118.153

Compare Regions (BH07:38,474,258-38,476,304:1)

View Sequence Alignments

33.49 %42.55 %n/an/aYes
Echinochloa crus-galli1-to-many

View Gene Tree

scaffold118.155

Compare Regions (BH07:38,486,731-38,490,132:1)

View Sequence Alignments

32.33 %26.89 %n/an/aYes
Echinochloa crus-galli1-to-many

View Gene Tree

scaffold2.1252

Compare Regions (CH07:40,266,658-40,271,078:1)

View Sequence Alignments

27.74 %42.55 %n/an/aYes
Echinochloa crus-galli1-to-many

View Gene Tree

scaffold83.112

Compare Regions (AH07:51,740,764-51,747,884:1)

View Sequence Alignments

18.86 %42.36 %n/an/aNo
Eragrostis curvula1-to-many

View Gene Tree

EJB05_09828

Compare Regions (Contig4:15,965,895-15,967,695:-1)

View Sequence Alignments

23.49 %18.76 %n/a0.00No
Eragrostis curvula1-to-many

View Gene Tree

EJB05_09831

Compare Regions (Contig4:15,967,704-15,968,669:-1)

View Sequence Alignments

38.60 %12.77 %n/a0.00No
Eragrostis curvula1-to-many

View Gene Tree

EJB05_35744

Compare Regions (7:32,674,435-32,676,432:1)

View Sequence Alignments

32.78 %42.17 %n/a85.67Yes
Eragrostis curvula1-to-many

View Gene Tree

EJB05_52884

Compare Regions (Contig408:102,512-105,782:1)

View Sequence Alignments

27.54 %22.05 %n/a0.00No
Eragrostis tef1-to-many

View Gene Tree

Et_10A_002236

Compare Regions (10A:5,103,922-5,109,697:-1)

View Sequence Alignments

25.62 %31.91 %n/an/aYes
Eragrostis tef1-to-many

View Gene Tree

Et_10B_002660

Compare Regions (10B:4,375,021-4,377,018:-1)

View Sequence Alignments

33.12 %41.01 %n/an/aYes
Eucalyptus grandis1-to-1

View Gene Tree

EUGRSUZ_H02473

Compare Regions (KK198760:33,816,295-33,817,844:-1)

View Sequence Alignments

55.89 %54.16 %n/a99.49Yes
Eutrema salsugineum1-to-1

View Gene Tree

EUTSA_v10007381mg

Compare Regions (KI517683:11,088,396-11,089,986:-1)

View Sequence Alignments

91.30 %91.30 %100100.00Yes
Ficus carica1-to-1

View Gene Tree

FCD_00002735

Compare Regions (11:1,767,248-1,768,795:-1)

View Sequence Alignments

58.84 %58.61 %n/an/aYes
Fraxinus excelsior1-to-1

View Gene Tree

FRAEX38873_v2_000206740

Compare Regions (FTPI01003794.1:58,964-65,132:1)

View Sequence Alignments

22.29 %22.63 %n/an/aNo
Glycine max1-to-many

View Gene Tree

GLYMA_05G173900

Compare Regions (5:36,306,126-36,307,685:-1)

View Sequence Alignments

53.53 %49.90 %n/a99.65Yes
Glycine max1-to-many

View Gene Tree

GLYMA_08G131100

Compare Regions (8:10,052,098-10,055,882:-1)

View Sequence Alignments

53.36 %53.77 %n/a98.91Yes
Glycine soja
(Wild soybean)
1-to-many

View Gene Tree

LOC114413070

Compare Regions (CM014361.1:38,199,641-38,204,686:-1)

View Sequence Alignments

53.17 %53.58 %n/an/aYes
Glycine soja
(Wild soybean)
1-to-many

View Gene Tree

LOC114421826

Compare Regions (CM014364.1:10,141,824-10,145,515:-1)

View Sequence Alignments

53.36 %53.77 %n/an/aYes
Gossypium raimondii1-to-many

View Gene Tree

B456_005G176400

Compare Regions (5:51,730,499-51,731,967:-1)

View Sequence Alignments

56.25 %50.48 %n/a99.05Yes
Gossypium raimondii1-to-many

View Gene Tree

B456_012G173300

Compare Regions (12:34,310,655-34,312,307:1)

View Sequence Alignments

57.36 %57.25 %n/a99.59Yes
Helianthus annuus1-to-1

View Gene Tree

HanXRQr2_Chr08g0318321

Compare Regions (8:1,190,309-1,192,085:-1)

View Sequence Alignments

21.59 %22.63 %n/an/aNo
Hordeum vulgare1-to-1

View Gene Tree

HORVU.MOREX.r3.2HG0110560

Compare Regions (2H:33,039,537-33,043,770:-1)

View Sequence Alignments

32.88 %41.97 %n/an/aYes
Ipomoea triloba1-to-1

View Gene Tree

itb14g06040

Compare Regions (14:5,242,579-5,248,134:1)

View Sequence Alignments

21.31 %22.05 %n/a97.62No
Juglans regia1-to-1

View Gene Tree

Jr13_19790

Compare Regions (13:22,041,925-22,045,515:1)

View Sequence Alignments

46.89 %59.77 %n/an/aYes
Kalanchoe fedtschenkoi1-to-1

View Gene Tree

Kaladp0867s0005.v1.1

Compare Regions (Scaffold_867:63,101-64,996:1)

View Sequence Alignments

56.26 %56.48 %n/a98.05Yes
Lactuca sativa1-to-1

View Gene Tree

gene-LSAT_8X152860

Compare Regions (8:263,828,982-263,831,212:1)

View Sequence Alignments

22.61 %21.08 %n/an/aNo
Lathyrus sativus1-to-1

View Gene Tree

gene-LATHSAT_LOCUS30727

Compare Regions (OZ012741.1:650,761,891-650,763,441:-1)

View Sequence Alignments

56.59 %56.48 %n/an/aYes
Leersia perrieri1-to-many

View Gene Tree

LPERR03G16970

Compare Regions (3:12,994,450-12,998,008:-1)

View Sequence Alignments

34.14 %35.59 %n/a0.00No
Leersia perrieri1-to-many

View Gene Tree

LPERR08G07930

Compare Regions (8:7,179,803-7,184,742:-1)

View Sequence Alignments

24.79 %35.01 %n/a0.00No
Lolium perenne1-to-1

View Gene Tree

KYUSg_chr2.3401

Compare Regions (2:20,353,259-20,355,241:1)

View Sequence Alignments

32.58 %41.59 %n/an/aYes
Lupinus angustifolius1-to-1

View Gene Tree

TanjilG_05732

Compare Regions (LG12:12,809,349-12,810,797:-1)

View Sequence Alignments

56.43 %52.61 %n/a98.98Yes
Malus domestica Golden1-to-many

View Gene Tree

MD13G0090600

Compare Regions (13:7,373,706-7,377,274:1)

View Sequence Alignments

60.00 %59.77 %n/a100.00Yes
Malus domestica Golden1-to-many

View Gene Tree

MD16G0091800

Compare Regions (16:7,220,131-7,224,168:1)

View Sequence Alignments

60.97 %60.73 %n/a99.58Yes
Manihot esculenta1-to-many

View Gene Tree

Manes.13G021400.v8.1

Compare Regions (CM004399.2:3,110,902-3,116,030:-1)

View Sequence Alignments

60.47 %60.35 %n/an/aYes
Manihot esculenta1-to-many

View Gene Tree

Manes.13G022000.v8.1

Compare Regions (CM004399.2:3,156,244-3,159,020:-1)

View Sequence Alignments

59.30 %59.19 %n/an/aYes
Medicago truncatula1-to-1

View Gene Tree

gene49341

Compare Regions (CM010655.1:41,419,404-41,422,305:-1)

View Sequence Alignments

54.17 %53.97 %n/an/aYes
Musa acuminata1-to-1

View Gene Tree

Ma03_g08310

Compare Regions (CAJGYN010000003.1:5,994,925-5,999,944:1)

View Sequence Alignments

44.51 %40.81 %n/an/aYes
Nicotiana attenuata1-to-many

View Gene Tree

A4A49_32946

Compare Regions (scaffold03282:31,812-33,451:1)

View Sequence Alignments

21.72 %21.47 %n/a99.68No
Nicotiana attenuata1-to-many

View Gene Tree

A4A49_57634

Compare Regions (5:170,900-172,570:-1)

View Sequence Alignments

22.11 %21.86 %n/a99.68No
Olea europaea1-to-many

View Gene Tree

OE9A002855

Compare Regions (4:19,683,825-19,685,771:1)

View Sequence Alignments

22.22 %22.44 %n/an/aNo
Olea europaea1-to-many

View Gene Tree

OE9A045114

Compare Regions (19:1,225,891-1,231,951:1)

View Sequence Alignments

21.79 %21.66 %n/an/aNo
Oryza barthii1-to-1

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OBART07G26970

Compare Regions (7:23,656,937-23,659,637:-1)

View Sequence Alignments

29.22 %41.20 %n/a0.00No
Oryza brachyantha1-to-1

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OB07G32470

Compare Regions (7:18,236,248-18,238,242:-1)

View Sequence Alignments

31.02 %39.85 %n/a81.68Yes
Oryza glaberrima1-to-1

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ORGLA07G0213600

Compare Regions (7:21,333,458-21,335,455:-1)

View Sequence Alignments

32.03 %41.20 %n/a85.50Yes
Oryza glumipatula1-to-1

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OGLUM07G26940

Compare Regions (7:27,856,020-27,858,609:-1)

View Sequence Alignments

25.39 %41.39 %n/a0.00No
Oryza longistaminata1-to-1

View Gene Tree

AMDW01040837.1_FG001

Compare Regions (AMDW01040837.1:218-2,336:1)

View Sequence Alignments

31.34 %41.59 %n/a84.35Yes
Oryza nivara1-to-1

View Gene Tree

ONIVA07G26720

Compare Regions (7:24,187,793-24,190,384:-1)

View Sequence Alignments

31.01 %41.39 %n/a0.00No
Oryza punctata1-to-many

View Gene Tree

OPUNC07G25340

Compare Regions (7:30,723,627-30,727,767:-1)

View Sequence Alignments

30.57 %41.39 %n/a0.00No
Oryza punctata1-to-many

View Gene Tree

OPUNC08G08380

Compare Regions (8:9,522,307-9,525,383:-1)

View Sequence Alignments

32.95 %22.44 %n/a0.00No
Oryza rufipogon1-to-1

View Gene Tree

ORUFI07G27910

Compare Regions (7:25,740,211-25,742,779:-1)

View Sequence Alignments

25.60 %41.39 %n/a0.00No
Oryza sativa Indica Group1-to-1

View Gene Tree

BGIOSGA023686

Compare Regions (7:27,332,552-27,334,549:-1)

View Sequence Alignments

32.18 %41.39 %n/a85.50Yes
Oryza sativa Japonica Group1-to-1

View Gene Tree

OJ1165_F02.107  (Os07g0688100)

Compare Regions (7:29,228,000-29,232,760:-1)

View Sequence Alignments

32.18 %41.39 %n/a85.50Yes
Panicum hallii HAL21-to-1

View Gene Tree

GQ55_2G480200

Compare Regions (2:57,425,859-57,430,352:1)

View Sequence Alignments

33.13 %42.17 %n/a83.77Yes
Phaseolus vulgaris1-to-1

View Gene Tree

PHAVU_002G258900g

Compare Regions (2:42,501,392-42,502,948:-1)

View Sequence Alignments

53.86 %53.97 %n/a100.00Yes
Pistacia vera1-to-many

View Gene Tree

EVM0001432

Compare Regions (Contig498:1,480,698-1,482,251:-1)

View Sequence Alignments

60.15 %60.15 %n/a99.39Yes
Pistacia vera1-to-many

View Gene Tree

EVM0025809

Compare Regions (Contig430:203,462-205,015:1)

View Sequence Alignments

60.15 %60.15 %n/a99.39Yes
Pisum sativum1-to-1

View Gene Tree

Psat7g058760

Compare Regions (7LG7:98,913,082-98,914,632:1)

View Sequence Alignments

56.40 %56.29 %n/an/aYes
Populus trichocarpa1-to-1

View Gene Tree

Potri.008G185000.v4.1

Compare Regions (8:12,840,944-12,845,768:-1)

View Sequence Alignments

59.38 %58.80 %n/an/aYes
Prunus avium1-to-1

View Gene Tree

Pav_sc0000747.1_g570.1.mk

Compare Regions (Pav_sc0000747.1.:251,674-255,320:-1)

View Sequence Alignments

53.86 %51.26 %n/an/aYes
Prunus dulcis1-to-1

View Gene Tree

Prudul26B017690

Compare Regions (pdulcis26_s0007:918,129-922,308:-1)

View Sequence Alignments

55.22 %60.35 %n/a94.65Yes
Prunus persica1-to-1

View Gene Tree

PRUPE_1G242700

Compare Regions (G1:25,643,400-25,646,808:-1)

View Sequence Alignments

55.40 %60.54 %n/a94.63Yes
Quercus lobata1-to-many

View Gene Tree

QL03p056833

Compare Regions (3:56,830,066-56,836,076:-1)

View Sequence Alignments

61.75 %61.51 %n/an/aYes
Quercus lobata1-to-many

View Gene Tree

QL93p1848_0021

Compare Regions (Scq3eQI_1848:18,066-24,288:1)

View Sequence Alignments

61.75 %61.51 %n/an/aYes
Quercus suber1-to-1

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gene-CFP56_56140

Compare Regions (PKMF03009178.1:79,997-81,544:-1)

View Sequence Alignments

61.36 %61.12 %n/an/aYes
Rosa chinensis1-to-1

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RchiOBHm_Chr4g0432731

Compare Regions (4:56,820,651-56,824,615:-1)

View Sequence Alignments

60.58 %60.35 %n/a99.58Yes
Secale cereale1-to-1

View Gene Tree

SECCE2Rv1G0071430

Compare Regions (2R:44,105,512-44,107,494:1)

View Sequence Alignments

32.42 %41.39 %n/an/aYes
Sesamum indicum1-to-1

View Gene Tree

SIN_1026571

Compare Regions (LG8:12,008,221-12,009,945:1)

View Sequence Alignments

19.34 %21.47 %n/an/aNo
Setaria italica1-to-1

View Gene Tree

SETIT_004622mg

Compare Regions (V:2,130,669-2,132,657:1)

View Sequence Alignments

33.38 %42.75 %n/a84.40Yes
Setaria viridis1-to-1

View Gene Tree

SEVIR_5G018400v2

Compare Regions (5:1,292,620-1,298,238:1)

View Sequence Alignments

33.38 %42.75 %n/a84.40Yes
Solanum lycopersicum1-to-1

View Gene Tree

Solyc06g008190.1

Compare Regions (6:2,071,093-2,072,628:1)

View Sequence Alignments

22.90 %22.63 %n/a98.68No
Solanum tuberosum1-to-1

View Gene Tree

PGSC0003DMG400014696

Compare Regions (6:1,843,833-1,846,922:-1)

View Sequence Alignments

23.90 %22.05 %n/a98.66No
Sorghum bicolor1-to-1

View Gene Tree

SORBI_3002G423400

Compare Regions (2:77,071,116-77,075,905:1)

View Sequence Alignments

32.59 %42.17 %n/a83.47Yes
Theobroma cacao Matina 1-61-to-1

View Gene Tree

TCM_010606

Compare Regions (2:34,467,532-34,471,897:1)

View Sequence Alignments

56.98 %56.87 %n/a99.07Yes
Trifolium pratense1-to-1

View Gene Tree

Tp57577_TGAC_v2_gene6255

Compare Regions (LG3:5,471,192-5,473,835:-1)

View Sequence Alignments

55.66 %57.06 %n/a99.19Yes
Triticum aestivum1-to-1

View Gene Tree

TraesCS2A02G097300

Compare Regions (2A:51,030,301-51,032,280:1)

View Sequence Alignments

32.73 %41.78 %n/a0.00No
Triticum aestivum1-to-1

View Gene Tree

TraesCS2B02G112700

Compare Regions (2B:75,965,867-75,967,846:1)

View Sequence Alignments

32.27 %41.20 %n/a0.00No
Triticum aestivum1-to-1

View Gene Tree

TraesCS2D02G095900

Compare Regions (2D:48,035,290-48,037,269:-1)

View Sequence Alignments

32.73 %41.78 %n/a0.00No
Triticum dicoccoides1-to-1

View Gene Tree

TRIDC2AG011260

Compare Regions (2A:53,750,514-53,755,057:1)

View Sequence Alignments

32.73 %41.78 %n/a0.00No
Triticum dicoccoides1-to-1

View Gene Tree

TRIDC2BG013820

Compare Regions (2B:84,017,392-84,021,832:1)

View Sequence Alignments

32.27 %41.20 %n/a0.00No
Triticum spelta1-to-1

View Gene Tree

TraesTSP2A01G105800

Compare Regions (2A:57,505,006-57,506,985:1)

View Sequence Alignments

32.88 %41.97 %n/an/aYes
Triticum spelta1-to-1

View Gene Tree

TraesTSP2B01G126000

Compare Regions (2B:80,178,955-80,180,934:1)

View Sequence Alignments

32.27 %41.20 %n/an/aYes
Triticum spelta1-to-1

View Gene Tree

TraesTSP2D01G112300

Compare Regions (2D:49,144,877-49,146,856:-1)

View Sequence Alignments

32.73 %41.78 %n/an/aYes
Triticum timopheevii1-to-1

View Gene Tree

Tritim_EIv0.3_0207840

Compare Regions (OY997263.1:58,497,496-58,500,066:1)

View Sequence Alignments

32.88 %41.97 %n/an/aYes
Triticum timopheevii1-to-1

View Gene Tree

Tritim_EIv0.3_0342230

Compare Regions (OY997264.1:71,263,138-71,265,596:-1)

View Sequence Alignments

32.42 %41.39 %n/an/aYes
Triticum turgidum1-to-1

View Gene Tree

TRITD2Av1G025010

Compare Regions (2A:50,092,355-50,094,337:1)

View Sequence Alignments

32.73 %41.78 %n/a81.59Yes
Triticum turgidum1-to-1

View Gene Tree

TRITD2Bv1G032420

Compare Regions (2B:77,820,139-77,822,121:1)

View Sequence Alignments

32.58 %41.59 %n/a81.59Yes
Triticum urartu1-to-1

View Gene Tree

TuG1812G0200000971.01

Compare Regions (2:45,279,550-45,283,165:1)

View Sequence Alignments

32.58 %41.59 %n/an/aYes
Vicia faba1-to-1

View Gene Tree

Vfaba.Hedin2.R1.6g144920

Compare Regions (OX451741.1:1,138,050,396-1,138,051,946:-1)

View Sequence Alignments

57.36 %57.25 %n/an/aYes
Vigna angularis1-to-1

View Gene Tree

LR48_Vigan01g032200

Compare Regions (1:3,437,101-3,438,657:1)

View Sequence Alignments

52.51 %52.61 %n/a98.11Yes
Vigna radiata1-to-1

View Gene Tree

Vradi07g18520

Compare Regions (7:40,090,604-40,093,586:-1)

View Sequence Alignments

38.87 %50.68 %n/a87.46Yes
Vigna unguiculata1-to-1

View Gene Tree

Vigun03g080600.v1.2

Compare Regions (3:6,722,812-6,727,520:1)

View Sequence Alignments

52.18 %53.19 %n/an/aYes
Vitis vinifera1-to-1

View Gene Tree

Vitvi01g00625

Compare Regions (1:7,016,443-7,030,609:-1)

View Sequence Alignments

60.12 %60.35 %n/a98.62Yes
Zea mays1-to-1

View Gene Tree

Zm00001eb331140

Compare Regions (7:183,126,166-183,130,282:1)

View Sequence Alignments

32.38 %41.78 %n/an/aYes

Species without orthologues

16 species are not shown in the table above because they don't have any orthologue with AT1G13040.

  • Arabis alpina
  • Chara braunii
  • Chlamydomonas reinhardtii
  • Chondrus crispus
  • Coffea canephora
  • Cyanidioschyzon merolae
  • Dioscorea rotundata
  • Galdieria sulphuraria
  • Marchantia polymorpha
  • Nymphaea colorata
  • Oryza meridionalis
  • Ostreococcus lucimarinus
  • Papaver somniferum
  • Physcomitrium patens
  • Saccharum spontaneum
  • Selaginella moellendorffii

Additionally, cultivars of 8 species are not shown in this table. Cultivar orthologues can be found on the gene pages of these reference species:

  • Brassica rapa R-o-18
  • Hordeum vulgare
  • Olea europaea
  • Oryza sativa Japonica Group
  • Panicum hallii HAL2
  • Solanum tuberosum
  • Theobroma cacao Matina 1-6
  • Triticum aestivum